BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937058
Length=1739
Score E
Sequences producing significant alignments: (Bits) Value
AT3G44330.1 | Symbols: | INVOLVED IN: protein processing; LOCA... 2924 0.0
> AT3G44330.1 | Symbols: | INVOLVED IN: protein processing; LOCATED
IN: mitochondrion, endoplasmic reticulum, plasma membrane,
vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING:
13 growth stages; CONTAINS InterPro DOMAIN/s: Nicalin
(InterPro:IPR016574), EF-Hand 1, calcium-binding site (InterPro:IPR018247),
Nicastrin (InterPro:IPR008710); Has 245 Blast
hits to 243 proteins in 99 species: Archae - 6; Bacteria
- 10; Metazoa - 139; Fungi - 0; Plants - 46; Viruses - 0; Other
Eukaryotes - 44 (source: NCBI BLink). | chr3:16006675-16010965
FORWARD LENGTH=2071
Length=2071
Score = 2924 bits (1583), Expect = 0.0
Identities = 1689/1741 (97%), Gaps = 3/1741 (0%)
Strand=Plus/Plus
Query 1 AAAACCCTAGATCCACAACAATGGTGGATGAGAAGAAATCGAAGCAGAGACATCGAGTCA 60
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 60 AAAACCCTAGATCCACAACAATGGCGGAAGAGAAGAAATCGAAGCAGAGACATCGAGTCA 119
Query 61 TGGTCTTTGAATCTATGTATCCCATCGTCGCTCTTATGCTTATACTCGTCGCTTGCGTCG 120
||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 120 TGGTCTTCGAATCCATGTATCCCATCCTCGCTCTTATGCTTATACTCGTCGCTTGCGTCG 179
Query 121 AGCTTTGCGATGCAGCTACTGTTGTCGATGTTTATCGTTTAATTCAGTACGATATCTCCG 180
||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||| |
Sbjct 180 AGCTTTGCGATGCAGCTACTGTTGTAGATGTTTATCGTCTAATCCAGTACGATATCTCTG 239
Query 181 GTGTTCCTTTTGGTTCTCGTTTCTCTTCTCTTAATCATCATGCTGCTTCTCTTAGCTTCC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GTGTTCCTTTTGGTTCTCGTTTCTCTTCTCTTAATCATCATGCTGCTTCTCTTAGCTTCC 299
Query 241 AACGTGGTGCCGATCTATCTCGTTCTGTACTTATACTTCCTCTTCGTGAGCTTGACATTG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AACGTGGTGCCGATCTATCTCGTTCTGTACTTATACTTCCTCTTCGTGAGCTTGACATTG 359
Query 301 GTTTTGTTCAAGATTACATCTCGCAAAAGCAGTCGCTTGGTGGATTGTTGATTTTGCTTC 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CTTTTGTTCAAGATTACATCTCGCAAAAGCAGTCGCTTGGTGGATTGTTGATTTTGCTTC 419
Query 361 CTCAGACGTTTAGGCCTGGGAATGTTGGTGGTGGAAGTCTAAATTCTGAAAATGATGGGT 420
|||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 420 CTCAGACGTTTAGGCCTGGGAATGTTGGTGGTGGAAGTTTAAGCTCTGAAAATGATGGGT 479
Query 421 TTAGGAAG-TTATTAGCTCAACTTGAGAAGATACTTGTTCATGGAAACATACCTTTTCCT 479
||||| || ||||||| ||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 480 TTAGG-AGTTTATTAGGTCAACTTGAGAAGTTACTTGTACATGGAAACATACCTTTTCCT 538
Query 480 GTGTACTTCGCGTTTGAGAATGAAGAGACTGATGCTATGTTGGCTGATGTAAAGAAAAAT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GTGTACTTCGCGTTTGAGAATGAAGAGACTGATGCTATGTTGGCTGATGTAAAGAAAAAT 598
Query 540 GATGCACTTGGTCAGCAAGCTACTGCTACTACAGGCGGATATAAGCTTGTGATCTCTGTA 599
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 599 GATGCACTTGGTCAGCAAGCTACTGCTACTACTGGCGGATATAAGCTTGTTATCTCTGTA 658
Query 600 TCAGAGCCTAAGAAAATTGCATCTCCCATCATCACAAACATCAAGGGATGGCTACCCGGA 659
|||||||||| ||||||||||||||| | ||||||||||||| |||||||||| || |||
Sbjct 659 TCAGAGCCTAGGAAAATTGCATCTCCAACCATCACAAACATCCAGGGATGGCTGCCAGGA 718
Query 660 TTAAGAGCAGAAGGAGATTCCAACCAGCTTCCAACAATTGCTGTAGTTGCATCCTATGAT 719
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 719 TTAAGAGCAGAAGGAGATTCCAGCCAGCTTCCAACAATTGCTGTAGTTGCATCGTATGAT 778
Query 720 ACCTTCGGAGCAGCTCCGGCATTATCAGTTGGAAGTGACAGCAATGGAAGTGGGGTCGTG 779
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 779 ACCTTTGGAGCAGCTCCGGCATTATCAGTTGGAAGTGACAGCAATGGAAGTGGGGTTGTG 838
Query 780 GCGCTTCTTGAAGTGGCTAGACTATTTTCCGTTCTGTACTCAAATCCCAAGACAAGAGGG 839
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 839 GCGCTTCTTGAAGTGGCTAGATTATTTTCCGTTCTGTACTCAAATCCCAAGACGAGAGGG 898
Query 840 AGATACAATTTACTTTTTGCACTAACATCTGGTGGACCCTACAACTACGAAGGAACTCAA 899
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 AAATACAATTTACTTTTTGCACTAACATCTGGTGGACCCTACAACTACGAAGGAACTCAA 958
Query 900 AAGTGGCTGAAGAGCCTTGATCAGAGGATGCGTGAGAGCATTGATTATGCCATTTGCTTG 959
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 AAGTGGCTAAAGAGCCTTGATCAGAGGATGCGTGAGAGCATTGATTATGCCATTTGCTTG 1018
Query 960 AACAGTGTTGGGTCTTGGGACAGTGAACTATTGATCCATGTGTCAAAGCCTCCAGATAAC 1019
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1019 AACAGTGTTGGTTCTTGGGACAGTGAACTATTGATCCATGTGTCAAAGCCTCCGGATAAT 1078
Query 1020 GCCTATATAAAGCAAATTTTTGAGGGCTTCTCTAACGTGGCAGAAGACTTGGGTTTTCAA 1079
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1079 GCCTATATAAAACAAATTTTTGAGGGCTTCTCTAATGTGGCAGAAGACTTGGGTTTTCAA 1138
Query 1080 GTTGCTCTGAAGCACAAGAAGATTAATATCTCTAATTCACGAGTTGCTTGGGAGCATGAA 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 GTTGCTCTGAAGCACAAGAAGATTAATATCTCTAATTCACGAGTTGCTTGGGAGCATGAA 1198
Query 1140 CAGTTTTCAAGACTCAGAGTAACTGCAGCCACAATATCTGAACTTTCAACTCCACCCGAG 1199
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1199 CAATTTTCAAGACTCAGAGTAACTGCAGCCACATTATCTGAACTTTCAACTCCACCCGAG 1258
Query 1200 TTACTGGAAAATGCTGGAAGTCTGTCTGACACAAGGCAATTGGTGAGTGAAGATGCTATC 1259
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1259 TTACTGGAAAATGCTGGAAGTCTGTCTGACACAAGGCAATTGGTGAATGAAGATGCTATC 1318
Query 1260 ATTAAGGGTGTCAAATTGGTGGCTGAAAGCCTTGCGAAACATATCTATGGTCACCAAGGA 1319
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 ATTAAGGGTGTCAAGTTGGTGGCTGAAAGCCTTGCGAAACATATCTATGGTCACCAAGGA 1378
Query 1320 AAAGACATCAAGATTTTTGCTGATGACAGTAGTTTGGCTGTAAATCCATTCTATGTGAGA 1379
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 AAAGACATTAAGATTTTTGCTGATGACAGTAGTTTGGCTGTAAATCCATTCTATGTGAGA 1438
Query 1380 TCATGGTTGGATCTTTTGTCACAAACTCCTCGGGTAGCACCGTTTCTCTCAAAGAACGAA 1439
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1439 TCATGGTTGGATCTTTTGTCACAAACACCTCGGGTAGCACCGTTTCTCTCAAAGAACGAA 1498
Query 1440 CCATTAATCATGGCTCTGAAAAAGGAACTAGAGGATTATACTGCTGAAGTTAGTGTTCAA 1499
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1499 CCATTAATCATGGCTCTGAAGAAGGAACTAGAGGATTATACTGCTGAAGTGAGTGTTCAA 1558
Query 1500 CATGAATCTTTAGACGGAAGTTTCACCTTTTACGACTCAACAAAGGCTAGCCTTAATATA 1559
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 CATGAATCTTTAGATGGAAGTTTCACCTTTTACGACTCAACAAAGGCTAGCCTTAATATA 1618
Query 1560 TACCAGGTGGCGAGTGTAACCTTCGACTTGCTCTTGCTTCTGGTTCTAGGATCATACTTG 1619
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1619 TACCAGGTGGCAAGTGTAACGTTCGACTTGCTCTTGCTTCTGGTTCTAGGATCATACTTG 1678
Query 1620 ATAGTGCTTTTCAGTTTCCTCGTCATCACAACTCGGGGTCTGGATGACTTGATAAGCTTA 1679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1679 ATAGTGCTTTTCAGTTTCCTCGTCATCACAACTCGGGGTCTGGATGACTTGATAAGCTTA 1738
Query 1680 TTTCGCCGGCCTCCTTCCCGGAAAGTGAAAATGGGATGATTTGCTTCCTTT-CCGGTAAC 1738
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1739 TTTCGCCGGCCTCCTTCCCGGAAAGTGAAAATGGGATGATTTTCTTCCTTTTCCGGTAAC 1798
Query 1739 T 1739
|
Sbjct 1799 T 1799
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85993533585
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5