BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937062
Length=1058
Score E
Sequences producing significant alignments: (Bits) Value
AT3G44370.1 | Symbols: | Membrane insertion protein, OxaA/YidC... 1628 0.0
> AT3G44370.1 | Symbols: | Membrane insertion protein, OxaA/YidC
with tetratricopeptide repeat domain | chr3:16030322-16035161
REVERSE LENGTH=1908
Length=1908
Score = 1628 bits (881), Expect = 0.0
Identities = 991/1045 (95%), Gaps = 3/1045 (0%)
Strand=Plus/Plus
Query 1 TGGATAACTAGCATCAGAAGAATGTCACTTGATCATCATCCTGGATTTGATTCGGGTGGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 TGGATAACTAGCATCAGAAGAATGTCACTTGATCATCATCCTGGATTTGATTCGGGTGGA 740
Query 61 GCTTTATGGTTTCAGAATTTGACCGAAGTTCCCAATGGTCTTTATGGTCCTCTTTTCCCC 120
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 741 GCTTTATGGTTTCAGAATTTGACCGAAATTCCCAATGGTCTTTATGGTCCACTTTTCCCC 800
Query 121 TTTTTAATAGCTGGTTTGCATTACACAAACACACAGATAACTTTTACAGCATCCTCAGTT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 801 TTTTTAATAGCTGGTTTGCATTACACAAACACACAGATAACTTTTACAGCATCCTCAGTT 860
Query 181 CACAAAGTTGATAAATTCGCGGAACTGGCAAAAACTTTCAAGATGTTTTTGAATTTTTTG 240
|||||||||||||||||| ||||| |||||||| ||| ||||| ||| ||||| |||||
Sbjct 861 CACAAAGTTGATAAATTCACGGAATTGGCAAAAGCTTACAAGACATTTCTGAATCTTTTG 920
Query 241 ACATTTGCTCTTTATGGCCTTTCATTCCAAATGCCTCAGGGAAGTCTACTCTACTGGGCT 300
|||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 921 ACATGTGCTCTGTATTTCCTTTCATTCCAAATGCCTCAGGGAAGTCTACTCTACTGGGCT 980
Query 301 ACCAATTTGTCATTCAGCATAGCTCAGCAATCAATCCTTAACCACCCCGTTGTAAGTGCA 360
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 981 ACCAATTTGTCATTCAGCATTGCTCAGCAATCAATCCTTAACCATCCCGTTGTAAGTGCA 1040
Query 361 AAGTTGGGCCTACAAGCAAATGACTCTGTACAGAAAGAGGCTGGCAATCCTATATTAACA 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1041 AAGTTGGGCCTACAAGCAAATGACTCTGTACAGAAAGAAGCTGGCAATCCTATATTAACA 1100
Query 421 AACATTAATGAAGCAAAACTTACTGATTCATCCTCAAAAGGACGCTTGATCTCAGGGCAT 480
|| || ||||||| ||||| |||||| ||||||| |||||||| |||||||||| ||||
Sbjct 1101 AATATAAATGAAGGGAAACTCACTGATCCATCCTCGAAAGGACGGTTGATCTCAGTGCAT 1160
Query 481 AACTTAACCCCTAAAGAGTTGGTTGCTCTTTCTGCCAAATACTTATCCGGAGGGAACAAG 540
|||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 1161 AACTTAACCCCTAAGGAGTTGGTTGCTCTTTCTGCTAAATACTTATCCGGAGGGCACAAG 1220
Query 541 GATAAATCAATTCCGCTATTAAGATTGGCATTAGAAAAAGATCCTGAATACCTTCAAGCT 600
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1221 GATAAATCAATTCCGCTATTAAGATTGGCATTAGAAAAGGATCCTGAATACCTTCAAGCT 1280
Query 601 ATGGTTATTCTTGGCCAGGCTTTATATCAGAAAGACCAGTTTGCTGAAGCTGCAAAATAC 660
||| |||||||||| |||||||||||||||||||||||||| || ||||||||||||| |
Sbjct 1281 ATGATTATTCTTGGACAGGCTTTATATCAGAAAGACCAGTTCGCGGAAGCTGCAAAATGC 1340
Query 661 TTAGAGCTGGCTGCTTCAAAGCTTCTTGATACCAGTCCAACAGAAGTTGAAGAAGTCGAT 720
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1341 TTAGAGCAGGCTGCTTCAAAGCTTCTTGATACCAGTCCAACCGAAGTTGAAGAAGTCGAT 1400
Query 721 CTTTTAATTGTTGCATCCCAATGGGCAGGTGTCTCCAATATTCGCCAGGGAAAGACATCG 780
||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||
Sbjct 1401 CTTTTAATTGTTGCATCCCAATGGGCAGGTGTCTCCAATATACGTCAGGGGAAGACATCA 1460
Query 781 GAAGGAATCACTCACCTTGAAAGAGTAGCAAACATGAAAGAGCCTGACGATCCCAAGAGC 840
||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1461 GAAGGAATCACACACCTTGAAAGAGTAGCAAACATGAAAGAGCCCGACGATCCTAAGAGC 1520
Query 841 AAAGCTCATTACTTGGACGCATTGGTACTCTACTCAAGTGCTATATTCAACGAAGGAAGG 900
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1521 AAAGCTCATTACTTGGATGCATTGGTACTCTACTCAAGTGCGATATTCAACGAAGGAAGG 1580
Query 901 AGAGAGGAAGCAGCAAAGTATTTGAGAAGAGTGGTGGCTTATGATCCTTCCTTCAGTGAA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1581 AGAGAGGAAGCAGCAAAGTATTTGAGAAGAGTGGTGGCTTATGATCCTTCCTTCAGTGAA 1640
Query 961 TTGTTGAAACAATGCGAAGAAGATAATAATACCATTCCCACTTCTTCTTCATCTAATTCT 1020
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1641 TTGTTGAAACAATGCGAAGAAGATGATA---CCATTCCCACTTCTTCTTCATCTAATTCT 1697
Query 1021 GTCAACAAAACTTCATAACtttttt 1045
|| ||||||||||||| ||||||
Sbjct 1698 ACCAGCAAAACTTCATAAGTTTTTT 1722
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51806962440
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5