BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937063
Length=982
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31817.1 | Symbols: NFD3 | Ribosomal L18p/L5e family protein... 1489 0.0
> AT1G31817.1 | Symbols: NFD3 | Ribosomal L18p/L5e family protein
| chr1:11414749-11416444 REVERSE LENGTH=1216
Length=1216
Score = 1489 bits (806), Expect = 0.0
Identities = 927/986 (94%), Gaps = 6/986 (1%)
Strand=Plus/Plus
Query 1 CAAAATTTGCTTCGAGAAGAAAATGAATGGTGTTTCTCGTTATCTTCGAGCTTCTTCACT 60
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 67 CAAAATTTGCTTCGAGAAGAAAATGAATGGTGTCTCTCGTCATCTTCGAGCTTCTTCACT 126
Query 61 TCCGTCGTTGATTCGCAGCTATGGTGGAATCAATTCGGTCTGTCGATTTTCGTCTCAATC 120
|| || || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 TCTTTCATTAATTCGCAGCTATGGTGGAATCAATTCGGTCTGTCGATTTTCGTCTCAATC 186
Query 121 TGATGGCTTCTCTGGAGGGAGATTCAGAGAGCAAGGGCTAGTTCCTGGAGAGTCTGCAAA 180
||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||
Sbjct 187 TGATGGCTTCTCTGGAGGGAGATTCAGAGAGCAAGTGCCAGTTTCTGGAGAGTCTGCAAA 246
Query 181 TAATTCAGGCTTACCAAACACGGGAAGATTCGGTTCCCCTTCGGAGCCTAACCCTCCGAC 240
||||||||||||| |||||||||||||| |||||||| || |||||||||| ||| ||||
Sbjct 247 TAATTCAGGCTTATCAAACACGGGAAGAATCGGTTCCTCTCCGGAGCCTAATCCTTCGAC 306
Query 241 TCTGAGAACTTTCGGTGATATGAAAGCAGGCTTGTTAAACAGAGGAGTAAACGGTTTCTC 300
| |||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 307 TTTGAGAACTTTTGGTGATATGAAAGCAGGCTTGTTAAACAGAGGAGTCAATGGTTTCTC 366
Query 301 GGCTCCTAATGCTCCTCCTACCTTCAAAAATTCACTGAGATCAAGATTACCTAACTCCCT 360
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||
Sbjct 367 GGCTCCTAATGCTCCTCCTACCTTCAAAAGTTCACTGAGATCAAGATTACCAAACTCTCT 426
Query 361 ACCTGATCAGTTCAGTCAGACGAATCCAGGCTTACCAA-CT-GG-AGGAAGCGGATTCTC 417
||||||||||||| |||||||||||||||||||||||| | || |||||||||||||||
Sbjct 427 ACCTGATCAGTTCGGTCAGACGAATCCAGGCTTACCAAACACGGGAGGAAGCGGATTCTC 486
Query 418 TGCTCCTAGTGTATCAAGCTACGAGAATTTCACTCAATCTTCA-C--TTCTCAATGAGAA 474
|||||| ||| ||||||||||||||||||||||||||||||| | |||| || |||||
Sbjct 487 TGCTCCAAGTTTATCAAGCTACGAGAATTTCACTCAATCTTCTTCGCTTCTTAAGGAGAA 546
Query 475 TCCCCGCAGTGGAGGGAAGTCAAGCGACCTGGATTTTGTTAGAGAAGTAATAGAAGATGA 534
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 TTCCCGCAGTGGAGGGAAGTCAAGCGACCTGGATTTTGTTAGAGAAGTAATAGAAGATGA 606
Query 535 AGGAAGGAGAACCTCAGGGATATTCTCTCATTTCCATCGCCCAAACCTCGAAACGAATGC 594
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 607 AGGAAGGAGAACCGCAGGGATATTCTCTCATTTCCAACGCCCAAACCTCGAAACGAATGC 666
Query 595 TGACATCATTCACATCAAGATGTTGCGGAACAACACTTTTGTCACGGTTACAGATTCCAA 654
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 667 TGACATCATTCACATCAAGATGTTGAGGAACAACACTTTTGTCACGGTTACAGATTCCAA 726
Query 655 AGGAAACGTCAAATGCAAAGCAACATCCGGTAGTTTACCCGATCTGAAAGGTGGACGGAA 714
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||
Sbjct 727 AGGAAACGTCAAATGCAAAGCTACATCTGGTAGTTTACCCGATCTGAAAGGTGGAAGGAA 786
Query 715 GATGACAAATTACACAGCTGATGCAACCGCAGAAAACATTGGGAGAAGAGCTAAGGCTAT 774
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 787 GATGACGAATTACACAGCTGATGCAACCGCTGAAAACATTGGGAGAAGAGCTAAGGCTAT 846
Query 775 GGGACTGAAATCTGTGGTTGTTAAGGTTAACGGATTTACACACTTCGGGAAGAAGAAGAA 834
||| |||||||||||||| |||||||| ||||||||||| || ||||| |||||||||||
Sbjct 847 GGGGCTGAAATCTGTGGTGGTTAAGGTGAACGGATTTACGCATTTCGGAAAGAAGAAGAA 906
Query 835 AGCCATTATTGCGTTTAGGGACGGTTTCACCAACTCTAGGTCTGATCAGAATCCGATAGT 894
||| ||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 907 AGCTATTATCGCGTTTAGAGACGGTTTCACCAACTCGAGGTCTGATCAGAATCCGATAGT 966
Query 895 GTACATCGAGGACACGACTAGGAAAGCTCATAATGGTTGCAGATTACCAAAGAAACGTCG 954
|||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 967 CTACATCGAGGACACTACTAGGAAAGCTCATAATGGTTGCAGATTACCAAGGAAACGTCG 1026
Query 955 GGTGTGAAAAGAAAACATCGCATGTC 980
|||||||||||||||| || ||||||
Sbjct 1027 GGTGTGAAAAGAAAACGTCCCATGTC 1052
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48074078679
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5