BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937066
Length=376
Score E
Sequences producing significant alignments: (Bits) Value
AT3G44428.1 | Symbols: | ECA1 gametogenesis related family pro... 457 4e-128
AT3G45285.1 | Symbols: | ECA1 gametogenesis related family pro... 433 7e-121
> AT3G44428.1 | Symbols: | ECA1 gametogenesis related family protein
| chr3:16067393-16067725 REVERSE LENGTH=333
Length=333
Score = 457 bits (247), Expect = 4e-128
Identities = 309/338 (91%), Gaps = 7/338 (2%)
Strand=Plus/Plus
Query 21 ATGGGTGAGAGGATACAAAGAGTGTGTATGTCTATCTTAACAGTGATGGTTGTGATGCTA 80
|||||||||| ||||||||||||||| |||||||||||||||||||||||| || |||
Sbjct 1 ATGGGTGAGAACATACAAAGAGTGTGTGCGTCTATCTTAACAGTGATGGTTGTAATACTA 60
Query 81 TCACTTTCTGAAGATACGAAAGGTAATAATGATTTTGCTATGGCTCCAATGTCAGAGA-A 139
||||||||| ||||||||||||||||||||||| |||||||||||||||||||| | |
Sbjct 61 TCACTTTCT---GATACGAAAGGTAATAATGATTTGGCTATGGCTCCAATGTCAGA-ACA 116
Query 140 AGGGTTGCTGCCAAATCCAATGTCTTGTGTGGCAGACGCAAGAAAAATTCCTGATTGTGT 199
||||||||| ||||||||| ||||||||||||| ||||||||||||||||| ||||||||
Sbjct 117 AGGGTTGCTTCCAAATCCATTGTCTTGTGTGGCTGACGCAAGAAAAATTCCAGATTGTGT 176
Query 200 AGAGTCACTAAAACAAGGCAATT-TGAAAGATATaaaaaaaGAATGTTGCATTATTCTAC 258
|||| || | ||||||||| ||| |||||||||||||| |||||||||||||||||||||
Sbjct 177 AGAGGCAGTGAAACAAGGC-ATTGTGAAAGATATAAAACAAGAATGTTGCATTATTCTAC 235
Query 259 TCGGTCTTCCCGAAGATTGTTTTGGGATTTTATTTCCTATGCGTTTCTACTATCGTGTCG 318
||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
Sbjct 236 TCGGTCTTCCCGAAGTTTGTTTTGGGATTTTATTTCCTATGCGTTTCTACTACCGTATTA 295
Query 319 TACTTAAAATTACATGCAAATTAATAGGCATTTTTTAA 356
||||||| || |||||||||||||||||||||||||||
Sbjct 296 TACTTAAGATGACATGCAAATTAATAGGCATTTTTTAA 333
> AT3G45285.1 | Symbols: | ECA1 gametogenesis related family protein
| chr3:16614566-16614901 FORWARD LENGTH=336
Length=336
Score = 433 bits (234), Expect = 7e-121
Identities = 303/337 (90%), Gaps = 2/337 (1%)
Strand=Plus/Plus
Query 21 ATGGGTGAGAGGATACAAAGAGTGTGTATGTCTATCTTAACAGTGATGGTTGTGATGCTA 80
||| |||||| || |||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1 ATGAGTGAGAATATGCAAAGAGTGTGTGTGTCTATCTTAACAGTGATGGTTTTGATGCTA 60
Query 81 TCACTTTCTGAAGATACGAAAGGTAATAATGATTTTGCTATGGCTCCAATGTCAGAGAAA 140
||| ||||| ||| ||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 61 TCAATTTCTAAAGTTACGAAAGGTAATAATGATCATGCGCCGGCTCCAATGTCAGAGAAA 120
Query 141 GGGTTGCTGCCAAATCCAATGTCTTGTGTGGCAGACGCAAGAAAAATTCCTGATTGTGTA 200
|||||||||||||||||||| || ||||| || ||||||||||||||||| |||||||||
Sbjct 121 GGGTTGCTGCCAAATCCAATATCATGTGTAGCGGACGCAAGAAAAATTCCAGATTGTGTA 180
Query 201 GAGTCACTAAAACAAGGCAATTTGAAAGAT-ATaaaaaaaGAATGTTGCATTATTCTACT 259
||| || ||||||| ||| |||||||| || ||||||||||||||||| || ||||||||
Sbjct 181 GAGGCAATAAAACAGGGCCATTTGAAA-ATTATAAAAAAAGAATGTTGTATCATTCTACT 239
Query 260 CGGTCTTCCCGAAGATTGTTTTGGGATTTTATTTCCTATGCGTTTCTACTATCGTGTCGT 319
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |
Sbjct 240 CAGTCTTCCCGAAGATTGTTTTGGGATTTTATTTCCTATACGTTTCTACTATCGTATCAT 299
Query 320 ACTTAAAATTACATGCAAATTAATAGGCATTTTTTAA 356
|||||| ||||||||||||||||| ||||| ||||||
Sbjct 300 ACTTAAGATTACATGCAAATTAATTGGCATCTTTTAA 336
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17694247648
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5