BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937074

Length=211
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G63990.1 | Symbols: SPO11-2 | sporulation 11-2 | chr1:237428...   169    1e-41


> AT1G63990.1 | Symbols: SPO11-2 | sporulation 11-2 | chr1:23742842-23745374 
REVERSE LENGTH=1656
Length=1656

 Score =  169 bits (91),  Expect = 1e-41
 Identities = 110/119 (92%), Gaps = 1/119 (1%)
 Strand=Plus/Plus

Query  5    TTCAGGACTCTCATCGATGAAGTTCTTCTCCGATCAAAACCTCTCTTACGCTGATATTCT  64
            ||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct  35   TTCAGGACTATCATCGATGAAGTTCTTCTCCGATCAACACCTCTCTTACGCTGACATTCT  94

Query  65   TCTCCCTCACGAAGCTCGTGCTAGAATCGAAGTCTCTGTTCTTAATCTCGTACCTAATT  123
            ||| ||||||||||||||||||||||||||||| |||||||| |||||| | || ||||
Sbjct  95   TCTTCCTCACGAAGCTCGTGCTAGAATCGAAGTTTCTGTTCTCAATCTCCT-CCGAATT  152



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9400069063


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5