BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937085
Length=751
Score E
Sequences producing significant alignments: (Bits) Value
AT3G44620.2 | Symbols: | protein tyrosine phosphatases;protein... 841 0.0
> AT3G44620.2 | Symbols: | protein tyrosine phosphatases;protein
tyrosine phosphatases | chr3:16193829-16195833 FORWARD LENGTH=1229
Length=1229
Score = 841 bits (455), Expect = 0.0
Identities = 550/594 (93%), Gaps = 13/594 (2%)
Strand=Plus/Plus
Query 1 ATCTCCAACTTTTCAGGGG-A--ATGATGTACTGTCCCAACCTCACCACTTCTCCAACAA 57
||||||||||||||||||| | ||||||||||||||||||||||| |||||| |||||
Sbjct 10 ATCTCCAACTTTTCAGGGGAATGATGATGTACTGTCCCAACCTCACGGCTTCTCTAACAA 69
Query 58 TCCCTTCTTATTTACCATTTTGCCACCACACT-TAC--TTTCTTCCTTCTCATTTTCGAT 114
||||||| |||||||||||||||||| ||||| || |||| |||||||||||| ||||
Sbjct 70 TCCCTTCATATTTACCATTTTGCCACTACACTAGACAATTTCGTCCTTCTCATTTCCGAT 129
Query 115 CATCTGACAAAACCCCGAATCTCGTTTCTTGT-TTTCGGGCAAAACCCAGAATTTCTCAT 173
||||||| |||| ||||||||||||||| | | | || |||||||||||||||||||||
Sbjct 130 CATCTGATAAAAACCCGAATCTCGTTTC-TATCATCCGAGCAAAACCCAGAATTTCTCAT 188
Query 174 TCCCTTCGGTGCTTTGCATCATCTTCAATGGAGA---CGACTCCGACGCAGAGCAGCGAA 230
|| ||| ||||||||| |||||||||||||| || | ||||||||||||||||||||
Sbjct 189 TCGCTTAGGTGCTTTGTATCATCTTCAATGGCGACTCCTCCTCCGACGCAGAGCAGCGAA 248
Query 231 ACGAAACCTTTCTCTGTTCTTTTTGTCTGTCTCGGAAACATTTGTCGGAGTCCAGCAGCT 290
|| ||||||| |||||||||||||||||||||||||||||||||||| || ||||| |||
Sbjct 249 ACCAAACCTTACTCTGTTCTTTTTGTCTGTCTCGGAAACATTTGTCGCAGCCCAGCGGCT 308
Query 291 GAAGGTGTCTTTAGAGATATCGTGAAGAAGAGAGGTCTCGATTCCCAATTCATA-ATTGA 349
||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||
Sbjct 309 GAAGGTGTCTTTAGAGATATCGTGAAGAAGAGAGGTCTCGATTCCAAATTCA-ACATTGA 367
Query 350 TTCCGCTGGAACCATTGGTTATCACGAGGGGAATATGGCGGATCCAAGAATGAGAAGTGC 409
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 TTCCGCTGGAACAATTGATTATCACGAGGGGAATATGGCGGATCCAAGAATGAGAAGTGC 427
Query 410 TGCGAAACGTCGCGGGATTGAGATAACATCATTATCCAGACCGATTAAGGCATCTGATTT 469
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 428 TGCGAAACGTCGCGGGATTGAGATAACATCACTATCCAGACCGATCAAGGCATCTGATTT 487
Query 470 CAGGGAATTTGATCTCATTCTTGCAATGGATGACCAGAACAAAGAGGATATATTGAAGGC 529
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 CAGAGAATTTGATCTCATTCTTGCAATGGATGACCAGAACAAAGAGGATATATTGAAGGC 547
Query 530 TTATAATGTGTGGAAAGCCAGAGGGAATTTCCCGCCCGATGCAGATAAGAAGGT 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 TTATAATGTGTGGAAAGCCAGAGGGAATTTCCCGCCCGATGCAGATAAGAAGGT 601
Score = 268 bits (145), Expect = 4e-71
Identities = 164/173 (95%), Gaps = 2/173 (1%)
Strand=Plus/Plus
Query 580 AGGTTAAGCTAATGTGTTCTTATTGCAAGAAACACAATGACAAGTTTGTTCCTGATCCAT 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AGGTTAAGCTAATGTGTTCTTATTGCAAGAAACACAATGACAAGTTTGTTCCTGATCCAT 726
Query 640 ATTATGGTGGAGCTCAAGGTTTTGAGAAGGTGCTGGACTTGCTTGAAGATGCTTGTGAGT 699
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 727 ATTATGGTGGAGCCCAAGGTTTTGAGAAGGTACTGGACTTGCTTGAAGATGCTTGTGAGT 786
Query 700 CTTTGCTGGATAGTATCCCTGTGGAAAGTTGATGATAC-AGCAAGTTCAGAGT 751
||||||||||||||||| ||| | |||||||||||||| | ||||| || |||
Sbjct 787 CTTTGCTGGATAGTATCACTGCGCAAAGTTGATGATACTA-CAAGTACAAAGT 838
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36469990722
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5