BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937089
Length=232
Score E
Sequences producing significant alignments: (Bits) Value
AT3G42050.1 | Symbols: | vacuolar ATP synthase subunit H famil... 265 2e-70
> AT3G42050.1 | Symbols: | vacuolar ATP synthase subunit H family
protein | chr3:14228495-14233245 REVERSE LENGTH=1900
Length=1900
Score = 265 bits (143), Expect = 2e-70
Identities = 197/222 (89%), Gaps = 8/222 (4%)
Strand=Plus/Minus
Query 13 AAAGAAACATGCAA-AGTTCCCATCAAGCTTGCAAGAAGCTAGCGTACTTCGCACCCAAA 71
||||||||| | || || |||||||||||||||||||||||||||||||| |||||||
Sbjct 1571 AAAGAAACAGGGAAGAG-TCCCATCAAGCTTGCAAGAAGCTAGCGTACTTGGCACCCAG- 1514
Query 72 GAGAAGCCTCTGGATGCACAAGAGGGCGTTCTTGGTGACCTCGGCGTTCTCGTGGTTCAT 131
|||||||||||| |||||||||| ||||||||||| ||||| |||||||||||||| ||
Sbjct 1513 GAGAAGCCTCTGAATGCACAAGATAGCGTTCTTGGTCACCTCAGCGTTCTCGTGGTTTAT 1454
Query 132 CAGTTTCATCACTCGTTCTTTCGCCTTGAGGTCTGTTA-AGATCACTCTCCCTGCTGCAT 190
||| ||||||||||| ||||| ||||||||||||| || | ||||||||||| |||||||
Sbjct 1453 CAGCTTCATCACTCGCTCTTTTGCCTTGAGGTCTGCTACA-ATCACTCTCCCCGCTGCAT 1395
Query 191 GGTACTACTGTATGAACTGTGATAGATCAAAGCATGCCACCG 232
|||| | |||||||||||||| | |||||||||||||||||
Sbjct 1394 GGTA-T--TGTATGAACTGTGAGATATCAAAGCATGCCACCG 1356
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10455691792
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5