BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937090

Length=192
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G50930.1 | Symbols: BCS1 | cytochrome BC1 synthesis | chr3:1...  86.1    1e-16


> AT3G50930.1 | Symbols: BCS1 | cytochrome BC1 synthesis | chr3:18929526-18931839 
FORWARD LENGTH=2314
Length=2314

 Score = 86.1 bits (46),  Expect = 1e-16
 Identities = 88/108 (81%), Gaps = 3/108 (3%)
 Strand=Plus/Plus

Query  1     ATTGAAAGATAAGATTATTGATGAACCACTTTGCGAGGCAGAAGAAACTTG-TGACCCAC  59
             ||||||||||| || ||  |||||||| | | | ||  | || || | | |  || ||||
Sbjct  1383  ATTGAAAGATAGGACTAGCGATGAACCTCCTCGGGAATCTGACGATA-TAGAAGATCCAC  1441

Query  60    GGTACCAAAAAAGTGACACTCTCTGGACTGTTGAATTTCATAGATGGT  107
             ||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct  1442  GGTA-TAAAAAAGTGACACTCTCTGGACTGTTGAATTTCATAGATGGT  1488



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8500928319


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5