BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937091

Length=731
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G44620.2 | Symbols:  | protein tyrosine phosphatases;protein...   595    2e-169


> AT3G44620.2 | Symbols:  | protein tyrosine phosphatases;protein 
tyrosine phosphatases | chr3:16193829-16195833 FORWARD LENGTH=1229
Length=1229

 Score =  595 bits (322),  Expect = 2e-169
 Identities = 357/374 (95%), Gaps = 1/374 (0%)
 Strand=Plus/Plus

Query  188  CTCCGACGCAGAGCAGCGAAACTAAACCTTTCTCTGTTCTTTTTGTCTGTCTCGGAAACA  247
            |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct  229  CTCCGACGCAGAGCAGCGAAACCAAACCTTACTCTGTTCTTTTTGTCTGTCTCGGAAACA  288

Query  248  TTTGTCGGAGCCCAGCAGCTGAAGGTGTCTTTTAGAGATTTTGTGAAGAAGAGAGATCTC  307
            ||||||| |||||||| |||||||||||| ||||||||| | ||||||||||||| ||||
Sbjct  289  TTTGTCGCAGCCCAGCGGCTGAAGGTGTC-TTTAGAGATATCGTGAAGAAGAGAGGTCTC  347

Query  308  GATTCCCAATTCAACATTGATTCCGCTGGAACCATTGATGATCACGAGGGGAATATGGCG  367
            |||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct  348  GATTCCAAATTCAACATTGATTCCGCTGGAACAATTGATTATCACGAGGGGAATATGGCG  407

Query  368  GATCCAAGAATGACAAGTGCTGCGAAACGTCGCGGGATTGAGATAACATCATTATCCAGA  427
            ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  408  GATCCAAGAATGAGAAGTGCTGCGAAACGTCGCGGGATTGAGATAACATCACTATCCAGA  467

Query  428  CCGATTAAGGCATCTGATTTCAGGGACTTTGATCTCATTCTTGCAATGGATGAGCAGAAC  487
            ||||| ||||||||||||||||| || |||||||||||||||||||||||||| ||||||
Sbjct  468  CCGATCAAGGCATCTGATTTCAGAGAATTTGATCTCATTCTTGCAATGGATGACCAGAAC  527

Query  488  AAAGAGGATATATTGAAGGCTTATAATGTGTGGAAAGCCAGAGGGAATTTCCCGCCCGAT  547
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  528  AAAGAGGATATATTGAAGGCTTATAATGTGTGGAAAGCCAGAGGGAATTTCCCGCCCGAT  587

Query  548  GCAGATAAGAAGGT  561
            ||||||||||||||
Sbjct  588  GCAGATAAGAAGGT  601


 Score =  300 bits (162),  Expect = 1e-80
 Identities = 170/174 (98%), Gaps = 0/174 (0%)
 Strand=Plus/Plus

Query  558  AGGTTAAGCTAATGTGTTCGTATTGCAAGAAACACAATGACAAGTTTGTTCCTGATCCAT  617
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  667  AGGTTAAGCTAATGTGTTCTTATTGCAAGAAACACAATGACAAGTTTGTTCCTGATCCAT  726

Query  618  ATTATGGTGGAGCTCAAGGTTTTGAGAAGGTACTGGACTTGCTTGAAGATGCTTGTGAGT  677
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  727  ATTATGGTGGAGCCCAAGGTTTTGAGAAGGTACTGGACTTGCTTGAAGATGCTTGTGAGT  786

Query  678  CTTTGCTGGATAGTATCACTACGCAAAGTTGATGATACTACAAGTTCAAAGTCC  731
            |||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct  787  CTTTGCTGGATAGTATCACTGCGCAAAGTTGATGATACTACAAGTACAAAGTCC  840



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 35465307782


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5