BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg937110 Length=441 Score E Sequences producing significant alignments: (Bits) Value AT3G44760.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 104 7e-22 > AT3G44760.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root, flower; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF626) (TAIR:AT3G44770.1); Has 9 Blast hits to 9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:16305322-16306378 FORWARD LENGTH=1057 Length=1057 Score = 104 bits (56), Expect = 7e-22 Identities = 274/374 (73%), Gaps = 36/374 (10%) Strand=Plus/Plus Query 53 GATAGCATCAGACGCAGTTTTCAACAAACTCGCAATCATATTCAACATTCTCCTACTTGG 112 |||||| || || |||||||||||||||||| | ||| ||||||| ||||| | ||| Sbjct 356 GATAGCTTCGGATGCAGTTTTCAACAAACTCTCGCTCAAATTCAACGTTCTCGTTGTTGT 415 Query 113 AACGCTCTTGCCT-CTGTGGATATTACGGCCAGAAGAAAC-AGAGTTCATCGATTTAGAA 170 |||||| || | ||| |||| | || | |||| | | | ||||||||||| | Sbjct 416 AACGCTGATG-TTGCTGAGGAT-CT--GG---GGAGAATCTA-ACTTCATCGATTTCGTT 467 Query 171 AACTTTGAGATATCGAAAGTAACTTTCCGTG-GAACGATGGGGTTTTTGGCTTTGAT-AT 228 ||||||||||||||||||||||||||||||| | |||||||| ||||| || |||| || Sbjct 468 AACTTTGAGATATCGAAAGTAACTTTCCGTGAGG-CGATGGGGCTTTTGACTCTGATGAT 526 Query 229 TGGCATCTTGTTA-TCACTCGA-AATGTATT-CACTGCTTTGTATCTTTCATGTTCGACG 285 ||| | || ||| | ||| | || || || | ||| |||||||| | ||| | | Sbjct 527 -GGCTTATTTTTACT-ACTTGGGAA-GT-TTACGCTGGATTGTATCTG--A-GTT-G-CT 577 Query 286 CTGCGGGTTTGTTCGATGATACAACCGAAAGGACTT-ACATA-GAGATGGCTATGTTTTA 343 || | || |||| || | ||||| || | | | ||| |||||||| | || Sbjct 578 -TGAGC-TTAA--CGATC---CATTGGTAAGGA-TTGAAAAAAGAGTTGGCTATGATATA 629 Query 344 TGGTTTCTTGACTTTGGCCtttttttCTAATGAATCTGTTCGGTTTCGTCTGGGGATTTT 403 ||||||||||||| ||||||||| || |||| ||||| || ||| |||||||| ||| Sbjct 630 TGGTTTCTTGACTCTGGCCTTTTAC-CTCGTGAACCTGTTTGGATTCTTCTGGGGAATTT 688 Query 404 TGTCTCTACTAGTT 417 | | ||||||||| Sbjct 689 TATGGCTACTAGTT 702 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20961651333 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5