BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937110

Length=441
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G44760.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   104    7e-22


> AT3G44760.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: root, flower; 
EXPRESSED DURING: petal differentiation and expansion 
stage; BEST Arabidopsis thaliana protein match is: Protein of 
unknown function (DUF626) (TAIR:AT3G44770.1); Has 9 Blast 
hits to 9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr3:16305322-16306378 FORWARD 
LENGTH=1057
Length=1057

 Score =  104 bits (56),  Expect = 7e-22
 Identities = 274/374 (73%), Gaps = 36/374 (10%)
 Strand=Plus/Plus

Query  53   GATAGCATCAGACGCAGTTTTCAACAAACTCGCAATCATATTCAACATTCTCCTACTTGG  112
            |||||| || || |||||||||||||||||| |  ||| ||||||| ||||| |  ||| 
Sbjct  356  GATAGCTTCGGATGCAGTTTTCAACAAACTCTCGCTCAAATTCAACGTTCTCGTTGTTGT  415

Query  113  AACGCTCTTGCCT-CTGTGGATATTACGGCCAGAAGAAAC-AGAGTTCATCGATTTAGAA  170
            ||||||  ||  | ||| ||||  |  ||   | |||| | | | ||||||||||| |  
Sbjct  416  AACGCTGATG-TTGCTGAGGAT-CT--GG---GGAGAATCTA-ACTTCATCGATTTCGTT  467

Query  171  AACTTTGAGATATCGAAAGTAACTTTCCGTG-GAACGATGGGGTTTTTGGCTTTGAT-AT  228
            ||||||||||||||||||||||||||||||| |  |||||||| ||||| || |||| ||
Sbjct  468  AACTTTGAGATATCGAAAGTAACTTTCCGTGAGG-CGATGGGGCTTTTGACTCTGATGAT  526

Query  229  TGGCATCTTGTTA-TCACTCGA-AATGTATT-CACTGCTTTGTATCTTTCATGTTCGACG  285
             ||| | || ||| | ||| |  || || || | |||  ||||||||   | ||| | | 
Sbjct  527  -GGCTTATTTTTACT-ACTTGGGAA-GT-TTACGCTGGATTGTATCTG--A-GTT-G-CT  577

Query  286  CTGCGGGTTTGTTCGATGATACAACCGAAAGGACTT-ACATA-GAGATGGCTATGTTTTA  343
             || |  ||    ||||    ||   | ||||| || | | | ||| |||||||| | ||
Sbjct  578  -TGAGC-TTAA--CGATC---CATTGGTAAGGA-TTGAAAAAAGAGTTGGCTATGATATA  629

Query  344  TGGTTTCTTGACTTTGGCCtttttttCTAATGAATCTGTTCGGTTTCGTCTGGGGATTTT  403
            ||||||||||||| |||||||||   ||  |||| ||||| || ||| |||||||| |||
Sbjct  630  TGGTTTCTTGACTCTGGCCTTTTAC-CTCGTGAACCTGTTTGGATTCTTCTGGGGAATTT  688

Query  404  TGTCTCTACTAGTT  417
            | |  |||||||||
Sbjct  689  TATGGCTACTAGTT  702



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20961651333


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5