BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937111

Length=483
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G44760.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   586    6e-167


> AT3G44760.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: root, flower; 
EXPRESSED DURING: petal differentiation and expansion 
stage; BEST Arabidopsis thaliana protein match is: Protein of 
unknown function (DUF626) (TAIR:AT3G44770.1); Has 9 Blast 
hits to 9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr3:16305322-16306378 FORWARD 
LENGTH=1057
Length=1057

 Score =  586 bits (317),  Expect = 6e-167
 Identities = 437/493 (89%), Gaps = 15/493 (3%)
 Strand=Plus/Plus

Query  1    TCTTTCACTTCTGTCA-AAAACGATGAAGAAAACGGGAATGACTTGCAGATGGATAGCTT  59
            |||||| ||||||| |   |||||||||||||  |||| |||||||||||||||||||||
Sbjct  304  TCTTTCTCTTCTGTTACTTAACGATGAAGAAATTGGGATTGACTTGCAGATGGATAGCTT  363

Query  60   CGGATTCAGTTTTCAACAAATTATCGATCAAATTCAACGTTCTCGTTGTTGCAACGCTGA  119
            ||||| |||||||||||||| | ||| |||||||||||||||||||||||| ||||||||
Sbjct  364  CGGATGCAGTTTTCAACAAACTCTCGCTCAAATTCAACGTTCTCGTTGTTGTAACGCTGA  423

Query  120  T-TCTGCTGAGGATGACATGGAGAGAA--T---TT-ATCGATTTCGAAAACTTTGAGATA  172
            | | ||||||||||  | ||| |||||  |   || ||||||||||  ||||||||||||
Sbjct  424  TGT-TGCTGAGGAT--C-TGGGGAGAATCTAACTTCATCGATTTCGTTAACTTTGAGATA  479

Query  173  TCGAAAGTAAC-TTCTCGTGAGGCGATGGGGCTTTTGACTCTGATGATGGCTTCTTTTTA  231
            ||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  480  TCGAAAGTAACTTTC-CGTGAGGCGATGGGGCTTTTGACTCTGATGATGGCTTATTTTTA  538

Query  232  CTACTCGGGAAGTTTTCGATGGATTTTATCTGACTTGCTCAAGTTTAACGATCCATTGGT  291
            ||||| ||||||||| || |||||| ||||||| |||||  || ||||||||||||||||
Sbjct  539  CTACTTGGGAAGTTTACGCTGGATTGTATCTGAGTTGCTTGAGCTTAACGATCCATTGGT  598

Query  292  AAGGATTGACAAA-GAGTTGGCTATGTTATATGGTTTCTTGACTCTGGCCTTTTACCTCA  350
            ||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||| 
Sbjct  599  AAGGATTGAAAAAAGAGTTGGCTATGATATATGGTTTCTTGACTCTGGCCTTTTACCTCG  658

Query  351  TGAACCTGTTCGGATTCTTCTGGGGACTTTTATGGCTACCAGTTTCTCCTCCGAGTCTTC  410
            |||||||||| ||||||||||||||| |||||||||||| |||||||||||||||| |||
Sbjct  659  TGAACCTGTTTGGATTCTTCTGGGGAATTTTATGGCTACTAGTTTCTCCTCCGAGTATTC  718

Query  411  TTTTGGTTCTTCGATTCGCCAAGTCCAGAAACGTTAAAGAATTTCAAGATTAGGTTGCTT  470
            |||||||| ||||||||||||||||||  | | ||  ||||| |||||||||| || |||
Sbjct  719  TTTTGGTTATTCGATTCGCCAAGTCCATTACCTTTTGAGAATCTCAAGATTAGATTCCTT  778

Query  471  GGAGATGAAGATT  483
            |||||||||||||
Sbjct  779  GGAGATGAAGATT  791



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23007239326


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5