BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937115

Length=292
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G36290.1 | Symbols:  | Uncharacterized protein family (UPF00...   239    1e-62


> AT5G36290.1 | Symbols:  | Uncharacterized protein family (UPF0016) 
| chr5:14302739-14305176 FORWARD LENGTH=1224
Length=1224

 Score =  239 bits (129),  Expect = 1e-62
 Identities = 187/214 (87%), Gaps = 8/214 (4%)
 Strand=Plus/Plus

Query  85    TTGGCGACTCACAAGAACGCTATAGGATTGTCCA-T-----AACTATTGGACAAACGCGT  138
             |||||||||||||||||||| |||||| || ||| |     || ||||||||| ||  | 
Sbjct  832   TTGGCGACTCACAAGAACGCCATAGGAGTGGCCATTGGGGCAAGTATTGGACACAC-TG-  889

Query  139   TGTGTACTTCACCAGCGGTTGTTGGAGGAAGCATGCTGGCTTTAAGGATCTCACAACGGA  198
             |||||||||||| ||| ||||||||||||||||||||||||| ||||||||| ||||| |
Sbjct  890   TGTGTACTTCACTAGCAGTTGTTGGAGGAAGCATGCTGGCTTCAAGGATCTCGCAACGTA  949

Query  199   CGGTTGCAACTGTTGGAGGCTTGCTTTTCTTCGGCTTTTCAGTCTCCTCCTATTTCTATC  258
             |||| ||||||||||||||||| || ||| ||||||||||||||||||||||||||||||
Sbjct  950   CGGTCGCAACTGTTGGAGGCTTACTCTTCCTCGGCTTTTCAGTCTCCTCCTATTTCTATC  1009

Query  259   CTCCACTACAGTAAATGCGCTTCTTTCGAAAATG  292
             ||||| |  |||||||| ||||||||||||||||
Sbjct  1010  CTCCATTGTAGTAAATGTGCTTCTTTCGAAAATG  1043


 Score =  119 bits (64),  Expect = 2e-26
 Identities = 78/85 (92%), Gaps = 0/85 (0%)
 Strand=Plus/Plus

Query  1    GTTTAAGAGAAGCTCAAGTCATGCCAAGGGAAGACAGCCTTCCGTCGCTTATTCTCAAGA  60
            ||| ||||||||||| ||||| | |||||||||||| |||||||||| ||||||||||||
Sbjct  688  GTTGAAGAGAAGCTCGAGTCAGGTCAAGGGAAGACACCCTTCCGTCGTTTATTCTCAAGA  747

Query  61   TTTTGTACCCCAATATTTCTAGAGT  85
            |||||||||||||||||||| ||||
Sbjct  748  TTTTGTACCCCAATATTTCTGGAGT  772



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13471756732


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5