BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937123
Length=1048
Score E
Sequences producing significant alignments: (Bits) Value
AT3G44790.1 | Symbols: | TRAF-like family protein | chr3:16328... 1133 0.0
AT3G44800.1 | Symbols: | Meprin and TRAF (MATH) homology domai... 935 0.0
AT3G58220.2 | Symbols: | TRAF-like family protein | chr3:21564... 254 2e-66
AT3G44805.1 | Symbols: | TRAF-like superfamily protein | chr3:... 187 2e-46
AT3G58340.1 | Symbols: | TRAF-like family protein | chr3:21589... 167 2e-40
AT3G58380.1 | Symbols: | TRAF-like family protein | chr3:21597... 130 3e-29
AT3G58370.1 | Symbols: | TRAF-like family protein | chr3:21595... 119 6e-26
AT1G31370.1 | Symbols: | Ubiquitin-specific protease family C1... 97.1 3e-19
AT1G31390.1 | Symbols: | TRAF-like family protein | chr1:11243... 89.8 5e-17
AT1G31400.1 | Symbols: | TRAF-like family protein | chr1:11245... 78.7 1e-13
AT1G31380.1 | Symbols: | TRAF-like family protein | chr1:11240... 76.8 4e-13
AT2G05410.1 | Symbols: | TRAF-like family protein | chr2:19769... 75.0 1e-12
> AT3G44790.1 | Symbols: | TRAF-like family protein | chr3:16328792-16330265
FORWARD LENGTH=975
Length=975
Score = 1133 bits (613), Expect = 0.0
Identities = 870/989 (88%), Gaps = 38/989 (4%)
Strand=Plus/Plus
Query 43 AGAAATTCACTTGGGTGATTAAGAATTTCTCATCTTTGCAATCTAAGGCA-ATTGATTCT 101
|||| ||||||||||||||||||||||||||||||||||||||||| | | ||| |||||
Sbjct 11 AGAAGTTCACTTGGGTGATTAAGAATTTCTCATCTTTGCAATCTAA-GTACATTAATTCT 69
Query 102 GATGAATTTGTGGTCGGTGGCTGCAAATGGTGTCTTGTGGCCTCTCCTAAGGGATATCAG 161
||| |||| || ||||||||||||||| | | | | ||| |||||||||||||
Sbjct 70 GATAAATTCGTTATCGGTGGCTGCAAAT-G-G---T-T----TCT--TAAGGGATATCAG 117
Query 162 AATGCTAATTATTTGTCTCTGTTCCTGGTGGTTGCTACTTTAAAAACTTTGCCTTGTGGT 221
||||||||||||||||||||||| ||| |||||||||||| |||||| ||||| |
Sbjct 118 AATGCTAATTATTTGTCTCTGTTTCTGATGGTTGCTACTTCAAAAACATTGCC------T 171
Query 222 TGTGGATGGAGAAGACACATAAGATTTCGCCTAACTGTTGTAAATCAACTCTCCGA-CAA 280
||||||||||||||| ||| | |||||||||||||||||||||||||||| ||||| ||
Sbjct 172 TGTGGATGGAGAAGATACACACGATTTCGCCTAACTGTTGTAAATCAACTTTCCGATGAA 231
Query 281 CCTCTCCCGACGAGGAGAAAAAGAAGA-ATGGTTAGATGAATACCG-TACTATCTGTGGG 338
|| |||| || | |||||| ||| | |||||| || || | || | | ||| ||||
Sbjct 232 -CTTTCCCAACAACGAGAAACGGAA-ACATGGTTTGACCAA-AACGTTGTTCTCTCTGGG 288
Query 339 TATCAAAAAATG-CTTCTCCTTTCCAAACTTAATGCCAAAG-AAGGTGGATTTCTTGTGA 396
||| | | ||| ||| |||| |||||||||||| | ||| ||||||||||||||||||
Sbjct 289 AATCGACACATGATTTC-CCTTACCAAACTTAATG-CGAAGAAAGGTGGATTTCTTGTGA 346
Query 397 ACAATGAAGTCAAGATTGTTGCGGAGGTTGATGTTCTTCAAGTTATTGGCAAATTAGATG 456
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 347 ACAATGAAGTCAAGATTGTTGTGGAGGTTGATGTTCTTCAAGTTATTGGCAAATTAGATG 406
Query 457 TTTCTGA-GGATTCTCAAGAGGTAGCTCAACCTCTGAAAAGGATTAA-GCTAATTGATGG 514
|||| || ||| |||||||| ||| |||||||||||||||||| ||| ||||| ||||
Sbjct 407 TTTCAGAGGGA-TCTCAAGAAGTAACTCAACCTCTGAAAAGGA-TAAGGCTAAACGATGA 464
Query 515 TGGTGTTTCGGT-AAACGAAAGCATTGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGG 573
||||||||| || |||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 465 TGGTGTTTCCGTAAAAC-AAAGCATTGATGTCAATGGGTTTCAGGTTCTTCCTTCACAGG 523
Query 574 CGGAATCCGTGAAACGTATATTCGAAAGACACCCAGACATGGCATTAGAGTTTCGAGTAA 633
|||||| ||||||||||| || |||||||||||| |||||||| ||||||| |||| ||
Sbjct 524 TGGAATCGGTGAAACGTATCTTTGAAAGACACCCAAACATGGCACTAGAGTTCCGAGCAA 583
Query 634 TGAACCAACATATGAGGACATTATGCATAAATCTCCTCCTCAACATAATCGAGACTTTGT 693
|||||||||| ||||||||| ||| || ||| ||||||||| | ||||||| || |||
Sbjct 584 AGAACCAACATGTGAGGACATCATGTATGAATGTCCTCCTCAGCCTAATCGATACACTGT 643
Query 694 GCCAGTCACTGAAAGACATTTCCATTCATGAACTGGGCCAAGCAGAGAAAGCACTAAGAT 753
||||||||||| |||||||||||||| |||| |||||||| |||||||||||||||||||
Sbjct 644 GCCAGTCACTGCAAGACATTTCCATTGATGACCTGGGCCAGGCAGAGAAAGCACTAAGAT 703
Query 754 ACCTGAAAGATTCGGACTTTAAGGTGGATTGGTTAGAGCATAAACTGGAGGAAGTAAAGG 813
||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||
Sbjct 704 ACCTGAAAGATTCGGACTTTAAGGTGGATTGGTTAGAGCGTAAATTGGAGGAAGTGAAGG 763
Query 814 AAAAGAAGATGGAAGAGCAGATTGGTAAGTCTCGGATGCAAGAATTAGAGGAAGAACTGA 873
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 764 AAAAGAAGATGGAAGAGCAGATTGGTAAGTCTCGGATGCAAGAACTAGAGGAAGAGCTGA 823
Query 874 AGGTCTTCAAGCAGAATTGCTCTGACATAGAAGCTCAACTGGAGAAAGAAAAGCAAAAGT 933
|| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 824 AGATCTTCAAGCAGAAGTGCTCTGACATAGAAGCTCAACTGGAGAAAGAGAAGCAAAAGT 883
Query 934 GCTCAGACATAGAAGCTTTGCTGGAGAAAGAGAAGAAAAAGGTA-TTGGCCGCTGCCAGA 992
||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||
Sbjct 884 GCTCAGACATAGAAGCTTTGCTGGAGAAAGAGAAGGCAAAG-TCGTTGGCCGCTGCCAGA 942
Query 993 GCTCCTCTTCTAACGTTGGATGATGTTGT 1021
||||||| |||||||||||||||||||||
Sbjct 943 GCTCCTCCTCTAACGTTGGATGATGTTGT 971
> AT3G44800.1 | Symbols: | Meprin and TRAF (MATH) homology domain-containing
protein | chr3:16343333-16346027 FORWARD LENGTH=1695
Length=1695
Score = 935 bits (506), Expect = 0.0
Identities = 855/1012 (84%), Gaps = 69/1012 (7%)
Strand=Plus/Plus
Query 43 AGAAATTCACTTGGGTGATTAAGAATTTCTCATCTTTGCAATCTAAGG-CAATTGATTCT 101
|||||||||||||||||||||||||||||||||||||||||||| || || || | |||
Sbjct 11 AGAAATTCACTTGGGTGATTAAGAATTTCTCATCTTTGCAATCTGAGTACA-TTAAATCT 69
Query 102 GATGA-ATTTGTGGTCGGTGGCTGCAAATGGTGTCTTGTGGCCTCTCCTAAGGGATATCA 160
||| | ||| ||| ||||||||||||||||||||||| |||||| ||| || ||| | ||
Sbjct 70 GAT-ATATTCGTGATCGGTGGCTGCAAATGGTGTCTTTTGGCCTATCCCAATGGAAAACA 128
Query 161 GAATGCTAATTATTTGTCTCTGT-TCCTGG-TGGTTGCTACTTTAAAAACTTTGCCTTGT 218
|||||||| |||||||||||||| || ||| |||| |||||||||||||||||||||||
Sbjct 129 GAATGCTAGTTATTTGTCTCTGTATC-TGGATGGTC-CTACTTTAAAAACTTTGCCTTGT 186
Query 219 GGTTGTGGATGGAGAAGACACATAAGATTTCGCCTAACTGTTGTAAATCAACTCTCCGAC 278
|| ||| || || | | |||||||||||||||||||||||||||||||||||||||
Sbjct 187 GGATGTAGA---AG--G-CGCATAAGATTTCGCCTAACTGTTGTAAATCAACTCTCCGAA 240
Query 279 AACCTCTCCCGACGAGGAGAAA-AAGAA-GAATGGTTAGATGAATACCGTACTATCTGTG 336
||||||||||||||||||||| || || || ||||| ||| || | | | || | ||||
Sbjct 241 AACCTCTCCCGACGAGGAGAAGGAA-AACGA-TGGTTTGATAAAAAGCTTCCTCTGTGTG 298
Query 337 GGTATCAAAAAATGCTTCTCCTTTCCAAACTTAATGCCAAAGAAGGTGGATTTCTTGTGA 396
||||| || || ||||||| ||| ||||||||||||||||| | ||||||||||||||||
Sbjct 299 GGTATGAAGAAGTGCTTCTTCTTACCAAACTTAATGCCAAACATGGTGGATTTCTTGTGA 358
Query 397 ACAATGAAGTCAAGATTGTTGCGGAGGTTGATGTTCTTCAAGTTATTGGCAAATTAGATG 456
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 359 ACAATGAAGTCAAGATTGTTGCGGAGGTAGATGTTCTTGAAGTTATTGGCAAATTAGATG 418
Query 457 TTTCTGAGGATTCTCAAGAGGTAGCTCAACCTCTGAAAAGGATTAAGCTA-AT--TGATG 513
||||| |||| |||||||||||| | |||||| ||||||||| | |||| || |||||
Sbjct 419 TTTCTAAGGAATCTCAAGAGGTAATTAAACCTCGGAAAAGGATGAGGCTATATGGTGATG 478
Query 514 GTGGTGT--T-TCG-GTAA-----AC--G-AAAG--CAT---T-GATGTCAATGGGTTTC 555
|||||| | || || | || | ||| ||| | ||||||||||||||||
Sbjct 479 GTGGTGCGGTGTCTAGTCATTTGCACAAGGAAACTTCATCAGTAGATGTCAATGGGTTTC 538
Query 556 AAGTTCTTCCTTCACAGGCGGAATCCGTGAAACGTATATTCGAAAGACACCCAGACATGG 615
||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||
Sbjct 539 AAGTTCTTCCTTCACAGGCGGAATCTGTGAAGCGTATATTCGAAAGACACCCATACATGG 598
Query 616 CATTAGAGTTTCGAGTAATGAACCAACA-TATGAGGACATTATGCATAAATCTCCTCCTC 674
|||||||||| |||| || ||||||||| | ||||| ||| ||| |||||| ||||||||
Sbjct 599 CATTAGAGTTCCGAGCAAAGAACCAACAGT-TGAGGGCATCATGTATAAATGTCCTCCTC 657
Query 675 AACATAATCGAGACTTTGTGCCAGTCACTGAAAGACATTTCCATTCATGAACTGGGCCAA 734
| | ||||| |||| ||||||||||||||| |||| ||||||||| |||| || ||||||
Sbjct 658 AGCCTAATCAAGACGTTGTGCCAGTCACTGCAAGATATTTCCATTGATGACCTAGGCCAA 717
Query 735 GCAGAGAAAGCACTAAGATACCTG-AAAGATTC-GGACTTTAAGGTGGATTGGTTAGAGC 792
||||| ||| ||||| || |||| ||| |||| ||| ||||||||||||||| | ||||
Sbjct 718 ACAGAGCAAGTACTAACATTCCTGCAAA-ATTCTGGA-TTTAAGGTGGATTGGCTGGAGC 775
Query 793 ATAAACTGGAGGAAGTAAAGGAAAAGAAGATGGAAGAGCAGATTGGTAAGTCTCGGATGC 852
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 776 GTAAACTGGAGGAAGTAAAGGAAAAGAAGATCCAAGAGCACATTGGTAAGTCTCGGATGC 835
Query 853 AAGAATTAGAGGAAGAACTGAAGGTCTTCAAGCAGAATTGCTCTGACATAGAAGCTCAAC 912
||| |||||||||||| ||||||||||||||| |||| ||||||||||||||||||| ||
Sbjct 836 AAGGATTAGAGGAAGACCTGAAGGTCTTCAAGAAGAAGTGCTCTGACATAGAAGCTCTAC 895
Query 913 TGGAGAAAGA-AA--A-G--C--AA---A---A-G------TGCTCAGACATAGAAGCTT 951
|||||||||| || | | | || | | | ||||||||||||||||||
Sbjct 896 TGGAGAAAGAGAAGGAAGAACTCAAGGGATTGAAGCAAAAGTGCTCAGACATAGAAGCTC 955
Query 952 TGCTGGAGAAAGAGAAGAAAAAGGTATTGGC--C-GCTGCCAGAGCTCCTCT 1000
||||||||||||||||| |||||| ||||| | ||||||||| |||||||
Sbjct 956 TGCTGGAGAAAGAGAAGGGAAAGGTGTTGGCTGCTGCTGCCAGAACTCCTCT 1007
> AT3G58220.2 | Symbols: | TRAF-like family protein | chr3:21564450-21566482
REVERSE LENGTH=1636
Length=1636
Score = 254 bits (137), Expect = 2e-66
Identities = 329/418 (79%), Gaps = 27/418 (6%)
Strand=Plus/Plus
Query 531 GAAAGCATTGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGCGGA-A-TCCGTGAAAC 588
|||| ||| ||| |||||||||||||||||||||||||||||| | | | | |||| |
Sbjct 963 GAAACCATGGATATCAATGGGTTTCAAGTTCTTCCTTCACAGGTG-ACACTT-GTGAGCC 1020
Query 589 GTATATTCGAAAGACACCCAGACATGGCATTAGAGTTTCGA-GTAATGAACCAACATATG 647
|||| || ||| | |||||||||| ||||||| | ||| | | || ||||| |||| ||
Sbjct 1021 GTATTTTAAAAAAATACCCAGACATTGCATTAG-GATTCAATGCAAAGAACCGACATCTG 1079
Query 648 AGGACATTATGCATAAATCTCCTCCTCAACATAATCGAGACTTTGTGCCAGTCACTGAAA 707
|||||| |||||| ||| ||||| ||| | |||||||||| |||||||||||| | |
Sbjct 1080 AGGACAGCATGCATGAATGTCCTCATCAGCCTAATCGAGACACTGTGCCAGTCACC-ACA 1138
Query 708 G-A-CATTTCCATTC-ATGA-ACTGGGCCAAGCAGAGAAAGCACTAAG-ATACCTGAAAG 762
| | | | || | | | || | ||| ||||||| || |||||| | |||| || |||
Sbjct 1139 GGAGC-TCTC-AGACGAAGATA-TGGATGAAGCAGACAATGCACTA-GTATACGTGCAAG 1194
Query 763 ATTC-GGACTTTAAGGTGGATTGGTTAGAGCATA-AA-CTGGAGGAAGTAAAGGAAAAGA 819
|| | || |||||||||||||||||| || || | || ||| |||||||||| |||||||
Sbjct 1195 ATGCAGG-CTTTAAGGTGGATTGGTTGGA-CA-AGAAGCTGAAGGAAGTAAAAGAAAAGA 1251
Query 820 A-GATGGAAGAGCAGATTGGTAAGTCTCGGATGCAAGAATTAGAGGAAGAACTGAAGGTC 878
| | ||| |||||||| ||||||| | ||||| |||||||||||||| ||| ||||||
Sbjct 1252 AAG-TGGTAGAGCAGACTGGTAAGACCCGGATTCAAGAATTAGAGGAGGAATTGAAGGAA 1310
Query 879 TTCAAGCAGAATTGCTCT-GACATAGAAGCTCAACTGGAGAAAGAAAAG-CAAAAGTG 934
|| |||||||| |||| | |||| ||||||| ||||| ||||| ||| ||||||||
Sbjct 1311 TTTAAGCAGAAGTGCT-TAGACAGGGAAGCTCTGCTGGAAAAAGAGAAGGCAAAAGTG 1367
> AT3G44805.1 | Symbols: | TRAF-like superfamily protein | chr3:16350395-16351437
FORWARD LENGTH=747
Length=747
Score = 187 bits (101), Expect = 2e-46
Identities = 119/128 (93%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 346 AAATGCTTCTCCTTTCCAAACTTAATGCCAAAGAAGGTGGATTTCTTGTGAACAATGAAG 405
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 AAATGCTACTCCTTTCCGAACTTAATGCCAAAGAAGGTGGATTTCTTGTGAACAATGAAG 664
Query 406 TCAAGATTGTTGCGGAGGTTGATGTTCTTCAAGTTATTGGCAAATTAGATGTTTCTGAGG 465
|||||||| |||| ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 665 TCAAGATTATTGCAGAGGTAGATGTTCTTCAGGTTATTGGCAAATTAGATGTTTCTGAAA 724
Query 466 ATTCTCAA 473
|| |||||
Sbjct 725 ATACTCAA 732
Score = 159 bits (86), Expect = 4e-38
Identities = 106/115 (92%), Gaps = 3/115 (3%)
Strand=Plus/Plus
Query 352 TTCTCCTTTCCAAACTTAATGCCA-AAGAAGGTGGATTTCTTGTGAACAATGAAGTCAAG 410
|||| ||| |||||||||||| || || ||||||||||||||||||| |||||||||||
Sbjct 6 TTCT-CTTGCCAAACTTAATGTCAGAA-AAGGTGGATTTCTTGTGAAAAATGAAGTCAAA 63
Query 411 ATTGTTGCGGAGGTTGATGTTCTTCAAGTTATTGGCAAATTAGATGTTTCTGAGG 465
||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 64 ATTGTTGTGGAGGTTGATGTTCTTCAAGTTATTGGCAACTTAGATGTTTCTGAGG 118
> AT3G58340.1 | Symbols: | TRAF-like family protein | chr3:21589071-21590401
REVERSE LENGTH=978
Length=978
Score = 167 bits (90), Expect = 2e-40
Identities = 230/297 (77%), Gaps = 12/297 (4%)
Strand=Plus/Plus
Query 531 GAAAGCATTGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGCGGAATCCGTGAAACGT 590
|||||||||||||| |||||||||||||||||||||||||||| ||||| |||| ||||
Sbjct 553 GAAAGCATTGATGTTAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAGACGT 612
Query 591 ATATTCGAAAGACACCCAGACATGGCATTAGAGTTTCGA-GTAATGAACCAACATATGAG 649
|| || ||| ||| |||||||| ||| ||| | ||| | |||| |||||||||| ||||
Sbjct 613 ATTTTTAAAAAACATCCAGACATTGCAGTAG-GATTCCAAGTAAAGAACCAACATCTGAG 671
Query 650 GACATTATGCATAAATCTCCTCCTCAACATAATCGAGACTTTGTGCCAGTCACTGAAAGA 709
|| | || ||| ||| |||| ||||| |||| ||||| ||||||| || || | ||
Sbjct 672 GAAAACATTCATGAATTTCCTTGTCAACGTAATTGAGACGATGTGCCAATCTCTCCAGGA 731
Query 710 -CATTTCCATTCATGAACT-G-GGCCAAGCAGAGAAAGCACTAAGATACCTGAAAGATTC 766
| | || | | | || || | || ||| ||| | || | | |||| |||||||| |
Sbjct 732 GC-TCTCAAATGAAGATCTTGTGG--AAGTAGACATTGCGTTGACATACTTGAAAGATGC 788
Query 767 GG-ACTTTAAGGTGGATTGGTTAGAGCATAAACTGGAGGAAGT-AAAGGAAAAGAAG 821
|| | ||||||||||||||||||||| | || ||||| | || |||| ||||||||
Sbjct 789 GGGA-TTTAAGGTGGATTGGTTAGAGAAGAAGCTGGACCATGTGAAAG-AAAAGAAG 843
> AT3G58380.1 | Symbols: | TRAF-like family protein | chr3:21597799-21599568
REVERSE LENGTH=1236
Length=1236
Score = 130 bits (70), Expect = 3e-29
Identities = 262/352 (74%), Gaps = 23/352 (7%)
Strand=Plus/Plus
Query 528 AACGAAAGCATTGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGCGGAATCCGTGAAA 587
||| ||| |||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 613 AAC-AAATCATTGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAAG 671
Query 588 CGTATATTCGAAAGACACCCAGACATGGCATTAGA-GTTTCGAGTAATGAA-CCAACATA 645
|||||||| |||| | ||||| |||| |||| ||| || | |||||| ||| |
Sbjct 672 CGTATATTTGAAATATACCCAAACATTGCATCAGAAGTCCCTTC-AATGAAACCATG-TC 729
Query 646 TGAGGACATTATGCATAAATCTCCTCCTCA-ACATAATCGAGACTTTGTGCCAG-T-CAC 702
||| |||||||| ||| ||| | |||||| | ||||| || || ||||||| | | |
Sbjct 730 TGAAGACATTATACATGAATGTACTCCTCGGA-ATAATTGAAACGCTGTGCCAACTGC-C 787
Query 703 TGAA-AGACATTTCC-ATTCATGAACTGGGCCAAGCAGAGAAAGCACTAAGATACCTG-- 758
|| || | | || || | ||| |||| ||||| | ||| | || | ||
Sbjct 788 TGCGGAG-C-TCTCTGATAC-TGATCTGGATGAAGCATCCATTGCAGTTTTATTCGTGTC 844
Query 759 A-AAGATTCGGACTTTAAGGTGGATTGGTTAGAGCATAAACTGGAGGAAGTAAAGGAAAA 817
| ||| | || |||||| ||||||||||| ||| | || || ||||||||||||||||
Sbjct 845 ACAAGGT--GG-CTTTAAAGTGGATTGGTTGGAGAAGAAGCTCAAGGAAGTAAAGGAAAA 901
Query 818 GAAGATGGAA-GAGCAGATTGGTAAGTCTCGGATGCAAGAATTAGAGGAAGA 868
||||| | || | | | | ||||||| ||||| ||||| || ||||||||||
Sbjct 902 GAAGAAG-AATGTGGATAATGGTAAGGCTCGGCTGCAACAAATAGAGGAAGA 952
> AT3G58370.1 | Symbols: | TRAF-like family protein | chr3:21595774-21596538
REVERSE LENGTH=660
Length=660
Score = 119 bits (64), Expect = 6e-26
Identities = 84/94 (89%), Gaps = 0/94 (0%)
Strand=Plus/Plus
Query 525 GTAAACGAAAGCATTGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGCGGAATCCGTG 584
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 208 GTAAAGGAAAGCATTGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTG 267
Query 585 AAACGTATATTCGAAAGACACCCAGACATGGCAT 618
|| ||||||| |||||||| |||||| | ||||
Sbjct 268 AAGTGTATATTTGAAAGACATCCAGACTTTGCAT 301
> AT1G31370.1 | Symbols: | Ubiquitin-specific protease family
C19-related protein | chr1:11238298-11239363 REVERSE LENGTH=582
Length=582
Score = 97.1 bits (52), Expect = 3e-19
Identities = 78/90 (87%), Gaps = 4/90 (4%)
Strand=Plus/Plus
Query 531 GAAAGCATTGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGCGGAATCCGTGAA-ACG 589
|||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| | |
Sbjct 322 GAAAGCATCGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAAGA-G 380
Query 590 TATATTCGAAA-GACACCCAGACATGGCAT 618
| | || |||| | ||||||||||| ||||
Sbjct 381 TTTGTTTGAAAAG-CACCCAGACATTGCAT 409
> AT1G31390.1 | Symbols: | TRAF-like family protein | chr1:11243191-11244392
REVERSE LENGTH=807
Length=807
Score = 89.8 bits (48), Expect = 5e-17
Identities = 102/127 (80%), Gaps = 8/127 (6%)
Strand=Plus/Plus
Query 531 GAAAGCATTGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGCGGAATCCGTGAA-ACG 589
|||||||| ||| |||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct 460 GAAAGCATCGATATCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAACAA- 518
Query 590 TATATTCGA-AAGACACCCAGACATGGCATTAGAGTTTCGAGT--AATGAACCAACATAT 646
| | || || ||| ||||||||||| | || ||| ||||| | || ||||| || |||
Sbjct 519 TCTCTTTGAGAAG-CACCCAGACATCGTATCAGAATTTCGT-TCCAA-GAACCCACTTAT 575
Query 647 GAGGACA 653
||| |||
Sbjct 576 GAGAACA 582
> AT1G31400.1 | Symbols: | TRAF-like family protein | chr1:11245225-11246481
REVERSE LENGTH=837
Length=837
Score = 78.7 bits (42), Expect = 1e-13
Identities = 68/80 (85%), Gaps = 4/80 (5%)
Strand=Plus/Plus
Query 541 ATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGCGGAATCCGTGAA-ACGTATATTCGAA 599
||||||||||||||||||||||||||||||||| ||||| ||||| | | | ||| ||
Sbjct 461 ATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAACAA-TCTCTTCAAA 519
Query 600 AGA-CACCCAGACATGGCAT 618
| | ||||||||||| ||||
Sbjct 520 A-ATCACCCAGACATTGCAT 538
> AT1G31380.1 | Symbols: | TRAF-like family protein | chr1:11240451-11241099
REVERSE LENGTH=528
Length=528
Score = 76.8 bits (41), Expect = 4e-13
Identities = 70/83 (84%), Gaps = 6/83 (7%)
Strand=Plus/Plus
Query 531 GAAAGCATTG-ATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGCGGAATCCGTGAA-AC 588
||||||| || ||||||||||||||||||||||||||||||||| |||| ||||| |
Sbjct 136 GAAAGCA-TGTATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATTTGTGAAGA- 193
Query 589 GTATATTCGAAA-GACACCCAGA 610
|| | || |||| | ||||||||
Sbjct 194 GTCTGTTTGAAAAG-CACCCAGA 215
> AT2G05410.1 | Symbols: | TRAF-like family protein | chr2:1976918-1978553
FORWARD LENGTH=1082
Length=1082
Score = 75.0 bits (40), Expect = 1e-12
Identities = 66/79 (84%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 532 AAAGCATTGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGCGGAATCCGTGAAACGTA 591
||| ||| |||||||||||||||||||||||||||||||||| || || ||||| |||
Sbjct 625 AAACCATAGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGATTCTGTGAAGCGTT 684
Query 592 TATTCGAAAGACACCCAGA 610
| || |||| | ||| |||
Sbjct 685 TGTTTGAAAAAAACCTAGA 703
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51389532381
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5