BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937125

Length=915
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G30825.1 | Symbols: ARPC2A, DIS2 | Arp2/3 complex, 34 kD sub...   285    5e-76
  AT1G61520.1 | Symbols: LHCA3 | photosystem I light harvesting c...   226    3e-58
  AT5G52560.1 | Symbols: ATUSP, USP | UDP-sugar pyrophosphorylase...   187    1e-46


> AT1G30825.1 | Symbols: ARPC2A, DIS2 | Arp2/3 complex, 34 kD subunit 
p34-Arc | chr1:10960941-10963182 FORWARD LENGTH=1305
Length=1305

 Score =  285 bits (154),  Expect = 5e-76
 Identities = 187/203 (92%), Gaps = 2/203 (1%)
 Strand=Plus/Plus

Query  285  TCTTGATAAAGCTGTGGAGCTAAATTATCAGTGGATTGCATTTGATGATGTTTGTTACCA  344
            |||||||||||| ||||||||| ||||||| ||||||| ||||||||||||| |||||||
Sbjct  228  TCTTGATAAAGCAGTGGAGCTAGATTATCAATGGATTGAATTTGATGATGTTCGTTACCA  287

Query  345  TGTTCAGGTGACAGTGAAGAATCCAAACCTCTTGTTGCTTGT-GGTTTCGTTACCAAATC  403
            ||||||||||||| ||||||||||||| || ||||||||| | |||||||||||||||||
Sbjct  288  TGTTCAGGTGACAATGAAGAATCCAAATCTGTTGTTGCTT-TCGGTTTCGTTACCAAATC  346

Query  404  CACCACCTGAAGCAATGTCCTTTGATGGACTTCCATTAGGAGCTATAGAAGCCATTAAAG  463
            |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| 
Sbjct  347  CACCACCTGAAGCAATGTCCTTTGATGGACTTCCTTTAGGAGCTATAGAAGCTATTAAAA  406

Query  464  CTACTTACAGGACTGGTTTTCAA  486
            | |||||| |||| |||||||||
Sbjct  407  CCACTTACGGGACAGGTTTTCAA  429


> AT1G61520.1 | Symbols: LHCA3 | photosystem I light harvesting 
complex gene 3 | chr1:22700010-22701383 FORWARD LENGTH=1198
Length=1198

 Score =  226 bits (122),  Expect = 3e-58
 Identities = 145/155 (94%), Gaps = 5/155 (3%)
 Strand=Plus/Plus

Query  763   TGATCATCCATCTCATGTG-TTTTATGTCTCTTTGTATCCTAAAATCTTTCTATCTCTT-  820
             ||||||| ||||||||||| ||||||||||| ||||||| || ||| |||| |||| || 
Sbjct  967   TGATCAT-CATCTCATGTGTTTTTATGTCTC-TTGTATCGTACAATATTTCCATCT-TTC  1023

Query  821   GCTACCATTGGCTTCTTCGTATTGTAACACCCTGTGTAAACATATTCGTGTTTTGTAAGA  880
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1024  GCTACCATTGGCTTCTTCGTATTGTAACACCCTGTGTAAACATATTCGTGTTTTGTAAGA  1083

Query  881   AATGACAATGTCAATGGCCAAAAGAAAAAACTTTT  915
             |||||||||||||||||||||| ||||||||||||
Sbjct  1084  AATGACAATGTCAATGGCCAAACGAAAAAACTTTT  1118


> AT5G52560.1 | Symbols: ATUSP, USP | UDP-sugar pyrophosphorylase 
| chr5:21330639-21334811 FORWARD LENGTH=2375
Length=2375

 Score =  187 bits (101),  Expect = 1e-46
 Identities = 111/116 (96%), Gaps = 0/116 (0%)
 Strand=Plus/Plus

Query  484   CAAGAGGTTGAAGTATTGTCTCATATCACATGGAAACCCAAGTGGGGAATGATCTTCTCT  543
             |||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||
Sbjct  1775  CAAGAGGTTGAAGTATGGTCTCGTATCACATGGAAACCCAAATGGGGAATGATCTTCTCT  1834

Query  544   GATATCAAAAAGAAAGTCAGCAGGAACTGCGAGGTCTCTCAGAGATCCACGATGGC  599
             ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct  1835  GATATCAAAAAGAAAGTCAGCGGGAACTGCGAGGTCTCTCAGAGATCCACAATGGC  1890



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 44708390830


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5