BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937127
Length=586
Score E
Sequences producing significant alignments: (Bits) Value
AT3G44800.1 | Symbols: | Meprin and TRAF (MATH) homology domai... 427 5e-119
AT3G44790.1 | Symbols: | TRAF-like family protein | chr3:16328... 390 7e-108
AT2G05410.1 | Symbols: | TRAF-like family protein | chr2:19769... 73.1 3e-12
AT3G58220.2 | Symbols: | TRAF-like family protein | chr3:21564... 71.3 1e-11
AT3G58380.1 | Symbols: | TRAF-like family protein | chr3:21597... 71.3 1e-11
AT3G58370.1 | Symbols: | TRAF-like family protein | chr3:21595... 69.4 4e-11
AT1G31380.1 | Symbols: | TRAF-like family protein | chr1:11240... 69.4 4e-11
AT1G31370.1 | Symbols: | Ubiquitin-specific protease family C1... 69.4 4e-11
AT1G31390.1 | Symbols: | TRAF-like family protein | chr1:11243... 63.9 2e-09
AT1G31400.1 | Symbols: | TRAF-like family protein | chr1:11245... 63.9 2e-09
> AT3G44800.1 | Symbols: | Meprin and TRAF (MATH) homology domain-containing
protein | chr3:16343333-16346027 FORWARD LENGTH=1695
Length=1695
Score = 427 bits (231), Expect = 5e-119
Identities = 463/569 (81%), Gaps = 40/569 (7%)
Strand=Plus/Plus
Query 21 ATGGGAAATGAGAAGTTCACTTGGGTGATTAACAATTTCTCATCTTTGCAATCTAAGT-C 79
||||| ||||||| ||||||||||||||||| ||||||||||||||||||||| ||| |
Sbjct 1 ATGGGGTATGAGAAATTCACTTGGGTGATTAAGAATTTCTCATCTTTGCAATCTGAGTAC 60
Query 80 ATTTTTATCTGATA-AGTTCGTGATCGGTGGCTGCAAATGGTATCTTGTGGCGTATCCCA 138
| || |||||||| | ||||||||||||||||||||||||| |||| |||| |||||||
Sbjct 61 A-TTAAATCTGATATA-TTCGTGATCGGTGGCTGCAAATGGTGTCTTTTGGCCTATCCCA 118
Query 139 ATGGCAAACATAA-GAATAATTATTTGTCTCTATATTTGG-TGGTAGCTAATTTTGAAAC 196
|||| ||||| || | || |||||||||||| ||| ||| |||| ||| ||| ||||
Sbjct 119 ATGGAAAACAGAATG-CTAGTTATTTGTCTCTGTATCTGGATGGT-CCTACTTTAAAAAC 176
Query 197 TTTGCCTTGTGGATGGAGTAGACACATAAAATGTT-GCTTAACTGTTGAAAATCAACTCT 255
||||||||||||||| || || | ||||| || || || ||||||||| |||||||||||
Sbjct 177 TTTGCCTTGTGGATGTAGAAGGCGCATAAGAT-TTCGCCTAACTGTTGTAAATCAACTCT 235
Query 256 CCGACAACCTCTCACAAC-AGCGAGAA-GAAACACAGTGCTGGTTACATCGAAAGAGATT 313
|||| |||||||| | || || ||||| |||| || | ||||| || ||| || ||
Sbjct 236 CCGAAAACCTCTCCCGACGAG-GAGAAGGAAA-AC---GATGGTTTGAT--AAAAAGCTT 288
Query 314 --T-TACCAAGGGTATCCAGAAATGATTTC-CCTTAGAAAACTTAATGCCAAAGAAGGTG 369
| | |||||| |||| || ||| |||| ||||||||||||||| | ||||
Sbjct 289 CCTCT-GTGTGGGTATGAAGAAGTG-CTTCTTCTTACCAAACTTAATGCCAAACATGGTG 346
Query 370 GATTTGTTGTGAACAATGAAGTCAAGATTATTGTGGAGGTTGACGTTCTTCAAGTTATTG 429
||||| ||||||||||||||||||||||| ||| |||||| || |||||| |||||||||
Sbjct 347 GATTTCTTGTGAACAATGAAGTCAAGATTGTTGCGGAGGTAGATGTTCTTGAAGTTATTG 406
Query 430 GCAAATTAGATGTTTCTGAGGGATCTCAAGAGGTTACTCAACCTTTGAAAATGATGAGGC 489
||||||||||||||||| ||| |||||||||||| | | ||||| ||||| ||||||||
Sbjct 407 GCAAATTAGATGTTTCTAAGGAATCTCAAGAGGTAATTAAACCTCGGAAAAGGATGAGGC 466
Query 490 TA-A--ATGATGATGGTGCAGCGTCTAGTCATTTG--C----AAAC--CAT--G--GATG 534
|| | ||||| |||||| | ||||||||||||| | |||| ||| | ||||
Sbjct 467 TATATGGTGATGGTGGTGCGGTGTCTAGTCATTTGCACAAGGAAACTTCATCAGTAGATG 526
Query 535 TCAATGGGTTTCAAGTTCTTCCTTCACAG 563
|||||||||||||||||||||||||||||
Sbjct 527 TCAATGGGTTTCAAGTTCTTCCTTCACAG 555
> AT3G44790.1 | Symbols: | TRAF-like family protein | chr3:16328792-16330265
FORWARD LENGTH=975
Length=975
Score = 390 bits (211), Expect = 7e-108
Identities = 447/554 (81%), Gaps = 43/554 (8%)
Strand=Plus/Plus
Query 21 ATGGGAAATGAGAAGTTCACTTGGGTGATTAACAATTTCTCATCTTTGCAATCTAAGT-C 79
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 1 ATGGGGTATGAGAAGTTCACTTGGGTGATTAAGAATTTCTCATCTTTGCAATCTAAGTAC 60
Query 80 ATTTTTATCTGATAAGTTCGTGATCGGTGGCTGCAAATGGTATCTTGTGGCGTATCCCAA 139
||| | |||||||| ||||| ||||||||||||||||||| |||| || | || |
Sbjct 61 ATTAAT-TCTGATAAATTCGTTATCGGTGGCTGCAAATGGTTTCTTAAGG-G-AT----A 113
Query 140 TGGCAAACATAAGAATAATTATTTGTCTCTATATT-TGGTGGTAGCTAATTTTGAAACTT 198
| || | || | ||||||||||||||| | || || |||| |||| || |||| |
Sbjct 114 T--CAGA-AT--G-CTAATTATTTGTCTCTGT-TTCTGATGGTTGCTACTTCAAAAACAT 166
Query 199 TGCCTTGTGGATGGAGTAGACACATAAAATGTT-GCTTAACTGTTGAAAATCAACTCTCC 257
|||||||||||||||| ||| ||| | || || || ||||||||| ||||||||| |||
Sbjct 167 TGCCTTGTGGATGGAGAAGATACACACGAT-TTCGCCTAACTGTTGTAAATCAACTTTCC 225
Query 258 GA-CAACCTCTCACAACAGCGAG-AA-GAAACACAGTGCTGGTTACATCGAAAGA-GATT 313
|| || || || ||||| |||| || | || ||| ||||| | | ||| | | ||
Sbjct 226 GATGAA-CTTTCCCAACAACGAGAAACGGAA-ACA----TGGTTTGA-CCAAA-ACG-TT 276
Query 314 -TTAC-C-AAGGGTATCCAGAAATGATTTCCCTTAGAAAACTTAATGCCAAAG-AAGGTG 369
|| | | ||| ||| | | ||||||||||||| |||||||||| | ||| ||||||
Sbjct 277 GTT-CTCTCTGGGAATCGACACATGATTTCCCTTACCAAACTTAATG-CGAAGAAAGGTG 334
Query 370 GATTTGTTGTGAACAATGAAGTCAAGATTATTGTGGAGGTTGACGTTCTTCAAGTTATTG 429
||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 335 GATTTCTTGTGAACAATGAAGTCAAGATTGTTGTGGAGGTTGATGTTCTTCAAGTTATTG 394
Query 430 GCAAATTAGATGTTTCTGAGGGATCTCAAGAGGTTACTCAACCTTTGAAAATGATGAGGC 489
|||||||||||||||| |||||||||||||| || ||||||||| |||||| ||| ||||
Sbjct 395 GCAAATTAGATGTTTCAGAGGGATCTCAAGAAGTAACTCAACCTCTGAAAAGGATAAGGC 454
Query 490 TAAATGATGATGGTGCAGCGTCTAGTCATTTGCAAACCATGGATGTCAATGGGTTTCAAG 549
|||| |||||||||| | | || | |||| ||| ||||||||||||||||| |
Sbjct 455 TAAACGATGATGGTGTTTC--C--GTAAAA--CAAAGCATTGATGTCAATGGGTTTCAGG 508
Query 550 TTCTTCCTTCACAG 563
||||||||||||||
Sbjct 509 TTCTTCCTTCACAG 522
> AT2G05410.1 | Symbols: | TRAF-like family protein | chr2:1976918-1978553
FORWARD LENGTH=1082
Length=1082
Score = 73.1 bits (39), Expect = 3e-12
Identities = 44/46 (96%), Gaps = 1/46 (2%)
Strand=Plus/Plus
Query 523 AAACCATGGATGTCAATGGGTTTCAAGTTCTTCCTTCACAG-TAGA 567
||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 625 AAACCATAGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGA 670
> AT3G58220.2 | Symbols: | TRAF-like family protein | chr3:21564450-21566482
REVERSE LENGTH=1636
Length=1636
Score = 71.3 bits (38), Expect = 1e-11
Identities = 40/41 (98%), Gaps = 0/41 (0%)
Strand=Plus/Plus
Query 523 AAACCATGGATGTCAATGGGTTTCAAGTTCTTCCTTCACAG 563
||||||||||| |||||||||||||||||||||||||||||
Sbjct 964 AAACCATGGATATCAATGGGTTTCAAGTTCTTCCTTCACAG 1004
> AT3G58380.1 | Symbols: | TRAF-like family protein | chr3:21597799-21599568
REVERSE LENGTH=1236
Length=1236
Score = 71.3 bits (38), Expect = 1e-11
Identities = 45/48 (94%), Gaps = 1/48 (2%)
Strand=Plus/Plus
Query 522 CAAACCATGGATGTCAATGGGTTTCAAGTTCTTCCTTCACAG-TAGAA 568
|||| ||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 615 CAAATCATTGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAA 662
> AT3G58370.1 | Symbols: | TRAF-like family protein | chr3:21595774-21596538
REVERSE LENGTH=660
Length=660
Score = 69.4 bits (37), Expect = 4e-11
Identities = 44/47 (94%), Gaps = 1/47 (2%)
Strand=Plus/Plus
Query 523 AAACCATGGATGTCAATGGGTTTCAAGTTCTTCCTTCACAG-TAGAA 568
||| ||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 215 AAAGCATTGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAA 261
> AT1G31380.1 | Symbols: | TRAF-like family protein | chr1:11240451-11241099
REVERSE LENGTH=528
Length=528
Score = 69.4 bits (37), Expect = 4e-11
Identities = 44/47 (94%), Gaps = 1/47 (2%)
Strand=Plus/Plus
Query 523 AAACCATGGATGTCAATGGGTTTCAAGTTCTTCCTTCACAG-TAGAA 568
||| |||| |||||||||||||||||||||||||||||||| |||||
Sbjct 137 AAAGCATGTATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAA 183
> AT1G31370.1 | Symbols: | Ubiquitin-specific protease family
C19-related protein | chr1:11238298-11239363 REVERSE LENGTH=582
Length=582
Score = 69.4 bits (37), Expect = 4e-11
Identities = 44/47 (94%), Gaps = 1/47 (2%)
Strand=Plus/Plus
Query 523 AAACCATGGATGTCAATGGGTTTCAAGTTCTTCCTTCACAG-TAGAA 568
||| ||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 323 AAAGCATCGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAA 369
> AT1G31390.1 | Symbols: | TRAF-like family protein | chr1:11243191-11244392
REVERSE LENGTH=807
Length=807
Score = 63.9 bits (34), Expect = 2e-09
Identities = 43/47 (91%), Gaps = 1/47 (2%)
Strand=Plus/Plus
Query 523 AAACCATGGATGTCAATGGGTTTCAAGTTCTTCCTTCACAG-TAGAA 568
||| ||| ||| ||||||||||||||||||||||||||||| |||||
Sbjct 461 AAAGCATCGATATCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAA 507
> AT1G31400.1 | Symbols: | TRAF-like family protein | chr1:11245225-11246481
REVERSE LENGTH=837
Length=837
Score = 63.9 bits (34), Expect = 2e-09
Identities = 37/38 (97%), Gaps = 1/38 (3%)
Strand=Plus/Plus
Query 532 ATGTCAATGGGTTTCAAGTTCTTCCTTCACAG-TAGAA 568
|||||||||||||||||||||||||||||||| |||||
Sbjct 461 ATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAA 498
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28181356467
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5