BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937131

Length=553
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G47090.1 | Symbols:  | Leucine-rich repeat protein kinase fa...   303    8e-82
  AT3G47580.1 | Symbols:  | Leucine-rich repeat protein kinase fa...   248    4e-65
  AT3G10310.1 | Symbols:  | P-loop nucleoside triphosphate hydrol...   220    9e-57


> AT3G47090.1 | Symbols:  | Leucine-rich repeat protein kinase 
family protein | chr3:17341512-17344645 REVERSE LENGTH=3030
Length=3030

 Score =  303 bits (164),  Expect = 8e-82
 Identities = 267/316 (84%), Gaps = 10/316 (3%)
 Strand=Plus/Plus

Query  21   ATGAGATTCTTTCTTTTACTTGCTTTTCTCGGTGCTCTCATGCTACTTGATGAAGCATAT  80
            |||||| | ||||||||||||||  || ||  ||||||||||| || |   |||||||||
Sbjct  1    ATGAGACTATTTCTTTTACTTGC--TT-TCAATGCTCTCATGCAAC-T--CGAAGCATAT  54

Query  81   CGTTTTACGGATGAAACTGATAGGCATGCGTTGCTGGTGTTCAAGTCTCAAGTTTCTGAA  140
             ||||||| ||||||| ||||||||| |||||| ||| | ||||||||||||||||||||
Sbjct  55   GGTTTTACCGATGAAAGTGATAGGCAAGCGTTGTTGGAGATCAAGTCTCAAGTTTCTGAA  114

Query  141  GGCAAAAGAGATGTCATGTCCTCATGGAACAACTCATTTCCTCTCTGCAAATGGAA-TGG  199
             ||||||| |||| | ||||| | ||||| |||||||| ||||||||||  ||||| |||
Sbjct  115  AGCAAAAGGGATGCCTTGTCCGCGTGGAATAACTCATTCCCTCTCTGCAGCTGGAAGTGG  174

Query  200  CGTTACATGTGGCCGCAAACACAAAAGAGTTAC-CGGTATGGACCTTGGAGGATTCCAAT  258
             |||| |||||||||||||||||| |||||||| | || ||||||| |||||||| || |
Sbjct  175  -GTTAGATGTGGCCGCAAACACAAGAGAGTTACTC-GTTTGGACCTCGGAGGATTGCAGT  232

Query  259  TAGGCGGCGTGATATCACCATCTATTGGTAATCTTTCGTTTCTCAAATGGCTTAATCTCT  318
            | || || ||||||||||||||||||||||||||||||||||||| ||  ||| | ||||
Sbjct  233  TGGGAGGAGTGATATCACCATCTATTGGTAATCTTTCGTTTCTCATATATCTTGACCTCT  292

Query  319  CCGATAACTCTTTTGG  334
            |  |||||||||||||
Sbjct  293  CTAATAACTCTTTTGG  308


> AT3G47580.1 | Symbols:  | Leucine-rich repeat protein kinase 
family protein | chr3:17532648-17536059 FORWARD LENGTH=3324
Length=3324

 Score =  248 bits (134),  Expect = 4e-65
 Identities = 254/310 (82%), Gaps = 16/310 (5%)
 Strand=Plus/Plus

Query  30   TTTCTTTTACTTGCTTTTCTCGGTGCTC-TCATGCTACTTGATGAAGCATATCGTTTTAC  88
            ||||||||||||  | || || |||||| |  || ||| ||  | |||| || | |||||
Sbjct  49   TTTCTTTTACTT--TCTT-TCAGTGCTCAT-TTGTTAC-TG--GGAGCAGATGGGTTTAC  101

Query  89   GGATGAAACTGATAGGCATGCGTTGCTGGTGTTCAAGTCTCAAGTTTCTGAAGGCAAAAG  148
             ||||||||||||||||| || ||| ||| ||||||||||||||||||||||||||||||
Sbjct  102  CGATGAAACTGATAGGCAAGCATTGTTGGAGTTCAAGTCTCAAGTTTCTGAAGGCAAAAG  161

Query  149  AGATGTCATGTCCTCATGGAACAACTCATTTCCTCTCTGCAAATGGAA-TGGCGTTACAT  207
            ||||||| | ||||||||||| |||||||| ||||| ||||| ||||| ||| |||||||
Sbjct  162  AGATGTCTTATCCTCATGGAATAACTCATTCCCTCTATGCAACTGGAAGTGG-GTTACAT  220

Query  208  GTGGCCGCAAACACAAAAGAGTTAC-CGGTATGGACCTTGGAGGATTCCAATTAGGCGGC  266
            |||| || |||||||| |||||||| |  | || |||| || ||||| || || ||||| 
Sbjct  221  GTGGTCGTAAACACAAGAGAGTTACTCATT-TGAACCTCGGGGGATTACAGTTGGGCGG-  278

Query  267  G-T-GATATCACCATCTATTGGTAATCTTTCGTTTCTCAAATGGCTTAATCTCTCCGATA  324
            | | | ||||||||||||| |||||| | |||||||||| ||  ||| |||| || ||||
Sbjct  279  GATAG-TATCACCATCTATCGGTAATGTATCGTTTCTCATATCACTTGATCTGTCTGATA  337

Query  325  ACTCTTTTGG  334
            || |||||||
Sbjct  338  ACGCTTTTGG  347


> AT3G10310.1 | Symbols:  | P-loop nucleoside triphosphate hydrolases 
superfamily protein with CH (Calponin Homology) domain 
| chr3:3190001-3195005 FORWARD LENGTH=2899
Length=2899

 Score =  220 bits (119),  Expect = 9e-57
 Identities = 138/147 (94%), Gaps = 2/147 (1%)
 Strand=Plus/Plus

Query  360   AGGAAAGAAAACATTCCTGAAGATCC-CTGGTCACCACTTGGAGTTGCAAATAATTTCAG  418
             |||||||| |||||||||| |||||| | ||||||||||||||||||| |||||||| ||
Sbjct  2663  AGGAAAGAGAACATTCCTGCAGATCCAC-GGTCACCACTTGGAGTTGCTAATAATTTTAG  2721

Query  419   TCATATAAAGTCCCCTGACACAAGCAACGCTAAGACTATGCGACGGCCGTCACTCACAGG  478
             ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  2722  TCATATAAAGTCCCCGGACACAAGCAACGCTAAGACTATGCGACGGCAGTCACTCACAGG  2781

Query  479   TGTAATGCCACCAGGACAAGAAAGATC  505
             ||||||||||||||| |||||||||||
Sbjct  2782  TGTAATGCCACCAGGGCAAGAAAGATC  2808



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26523629616


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5