BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937138
Length=567
Score E
Sequences producing significant alignments: (Bits) Value
AT3G44840.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 510 5e-144
AT3G44870.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 442 2e-123
> AT3G44840.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr3:16372499-16373759
REVERSE LENGTH=1047
Length=1047
Score = 510 bits (276), Expect = 5e-144
Identities = 385/436 (88%), Gaps = 14/436 (3%)
Strand=Plus/Plus
Query 45 GGATTGCTTGAAGCAGCAAAGGAGAAGATCAACGAAGCCATCTCTATGAAACTCGACATC 104
||||||||||||||||| | ||||||||||||||||||||||| | ||||||| | ||
Sbjct 73 GGATTGCTTGAAGCAGCTACCGAGAAGATCAACGAAGCCATCTCCACGAAACTCAATATA 132
Query 105 GTCTTCACTTCAAATCTTGTTAACATAGCAGATTTTGGTTGTTCCACTGGACCTAACACT 164
| | || |||||||||||||||||||||| ||||| |||||||||||||||||||| |||
Sbjct 133 GACCTCGCTTCAAATCTTGTTAACATAGCTGATTTCGGTTGTTCCACTGGACCTAATACT 192
Query 165 TTCAGAGCGGTACAAACCATAATAGATGCCGTGGAACACAAGTAT-----------T-AT 212
||||||||||| ||||||||||||||||||||||||||||||||| | ||
Sbjct 193 TTCAGAGCGGTTCAAACCATAATAGATGCCGTGGAACACAAGTATCAACAAGAAAATAAT 252
Query 213 CTCCATGAAACAGAATTCCAAGTTTTCTTCAACGATTCTTCAAACAACGATTTCAACACT 272
||| | |||| ||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 253 CTCGAGGAAATAGAGTTCCAAGTTTTTTTCAACGATTCTTCAAACAACGATTTCAACACT 312
Query 273 CTCTTCGAGACACTTCCTCCGGCTAGAAAATATTTTGTAACTGGAGTTCCGGGTTCTTTC 332
|||||| ||||||||||||| |||||||||||||||| |||||||||||| | ||||||
Sbjct 313 CTCTTCAAGACACTTCCTCCAGCTAGAAAATATTTTGCAACTGGAGTTCCAGCCTCTTTC 372
Query 333 TTTGGCCGTGTTCTTCCTAGGAGAAGTCTTCATGTCGGAGTTTCTTCTTATTCACTCCAT 392
||||| ||||||||||||||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 373 TTTGGACGTGTTCTTCCTAGGAGCAGTCTCCATGTCGGAGTTTCTTCTTACTCACTCCAT 432
Query 393 TTCGTATCCAAGATTTCCAAAGAAA-TTAAAGACCGTGATTCTCATGTATGGAACAAGGA 451
||| ||||||||||| |||| |||| |||||||| | |||||||||| |||||||||||
Sbjct 433 TTCTTATCCAAGATTCCCAA-GAAAATTAAAGACTGCGATTCTCATGCGTGGAACAAGGA 491
Query 452 CATACACTGCACTGGA 467
|||||||||||| |||
Sbjct 492 CATACACTGCACCGGA 507
> AT3G44870.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr3:16382219-16383605
FORWARD LENGTH=1198
Length=1198
Score = 442 bits (239), Expect = 2e-123
Identities = 365/426 (86%), Gaps = 7/426 (2%)
Strand=Plus/Plus
Query 47 ATTGCTTGAAGCAGCAAAGGAGAAGATCAACGAAGCCATCTCTATGAAACTCGACATCGT 106
|||| ||||||| |||||||| |||||||| ||||||||||||| ||||||||| ||||
Sbjct 133 ATTGGTTGAAGCTGCAAAGGAAAAGATCAATGAAGCCATCTCTACGAAACTCGATATCGA 192
Query 107 CTTCACTTCAAATCTTGTTAACATAGCAGATTTTGGTTGTTCCACTGGACCTAACACTTT 166
||| ||||||||||||||||||||||||||||||||||| || ||||||| ||||||||
Sbjct 193 CTTTACTTCAAATCTTGTTAACATAGCAGATTTTGGTTGCTCTTCTGGACCAAACACTTT 252
Query 167 CAGAGCGGTACAAACCATAATAGATGCCGTGGAACACAAGTATTATCTCCAT-G-AA-A- 222
|| |||||| |||||| |||| ||||| |||||| |||||||| | | | || |
Sbjct 253 CACAGCGGTGCAAACCTTAATCGATGCTGTGGAAAACAAGTATAAGAAAGAAAGTAATAT 312
Query 223 CAGAATTCCAAGTTTTCTTCAACGATTCTTCAAACAACGATTTCAACACTCTCTTCGAGA 282
| || ||||||||||||||||| |||||||| ||||| |||||||||||||| ||| | |
Sbjct 313 C-GAGTTCCAAGTTTTCTTCAATGATTCTTCGAACAATGATTTCAACACTCTTTTCAAAA 371
Query 283 CACTTCCTCCGGCTAGAAAATATTTTGTAACTGGAGTTCCGGGTTCTTTCTTTGGCCGTG 342
||||||||||||||||| ||||| | || |||||| ||||||||||||||||| ||||
Sbjct 372 CACTTCCTCCGGCTAGACTGTATTTCGCAAGTGGAGTACCGGGTTCTTTCTTTGGTCGTG 431
Query 343 TTCTTCCTAGGAGA-AGTCTTCATGTCGGAGTTTCTTCTTATTCACTCCATTTCGTATCC 401
|||||||||| | | ||||| ||| | ||||||||| |||| |||||||||||| |||||
Sbjct 432 TTCTTCCTAGAA-ATAGTCTCCATTTGGGAGTTTCTGCTTACTCACTCCATTTCATATCC 490
Query 402 AAGATTTCCAAAGAAATTAAAGACCGTGATTCTCATGTATGGAACAAGGACATACACTGC 461
|||||| |||||||| ||||||| |||||||||| ||| ||||||||||||||||| |||
Sbjct 491 AAGATTCCCAAAGAAGTTAAAGATCGTGATTCTCCTGTGTGGAACAAGGACATACATTGC 550
Query 462 ACTGGA 467
|||||
Sbjct 551 TCTGGA 556
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27226907674
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5