BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937141
Length=1655
Score E
Sequences producing significant alignments: (Bits) Value
AT3G44880.1 | Symbols: ACD1, LLS1, PAO | Pheophorbide a oxygena... 2579 0.0
> AT3G44880.1 | Symbols: ACD1, LLS1, PAO | Pheophorbide a oxygenase
family protein with Rieske [2Fe-2S] domain | chr3:16383595-16386312
FORWARD LENGTH=1985
Length=1985
Score = 2579 bits (1396), Expect = 0.0
Identities = 1573/1659 (95%), Gaps = 10/1659 (1%)
Strand=Plus/Plus
Query 1 TCC-ACATAACCAAATC-AG-AAAATGTCAGTGGTTTTACTATCTTCTACTTCTGCAACA 57
||| ||| ||||||| | || ||||||||||| |||||||| ||||||||||||||||||
Sbjct 242 TCCAACA-AACCAAA-CTAGAAAAATGTCAGTAGTTTTACTCTCTTCTACTTCTGCAACA 299
Query 58 ATCACAAAATCACAATCCAAAAAGATTCCCTTTTTATCTCCCACCACAAAATTCCCATTC 117
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ATCACCAAATCCCAATCCAAAAAGATTCCCTTTTTATCTCCCACCACAAAATTCCCATT- 358
Query 118 AAA-GTCTCAATTTCTCCATCAAGATCAAAACTTTTCAACAACCCTTTACGCGTGGCGGC 176
||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 359 AAAGGTCTCAATTTCTCCATCAAGATCGAAACTTTTCCACAACCCTTTACGCGTGGCGGC 418
Query 177 GCCACCGTCAATACCCACTTCGGATCCGGCGGAGGAGAAGCGGATAGAAGAAGAGTTCGG 236
||| ||||| |||||||||||||| || |||||||||||||||| |||||||| | |||
Sbjct 419 GCCGCCGTCTGTACCCACTTCGGATTCGACGGAGGAGAAGCGGATCGAAGAAGAATACGG 478
Query 237 CGGAGATAAGGAAGAAGAAGAGTCTGAGTTTAAGTGGAGAGATCATTGGTATCCAGTTTC 296
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 479 CGGAGATAAGGAAGAAGAAGGGTCTGAGTTTAAGTGGAGAGATCATTGGTATCCAGTTTC 538
Query 297 TTTGGTGGAGGATTTGGATCCGAATGTACCAACCCGGTTTCAGCTCTTGGGTCGAGACCT 356
|||||| |||||||||||||||||||| ||||||| ||| ||||||||||||||||||||
Sbjct 539 TTTGGTTGAGGATTTGGATCCGAATGTGCCAACCCCGTTCCAGCTCTTGGGTCGAGACCT 598
Query 357 TGTCCTCTGGTTTGATCGGAATGATCAGAAATGGGCCGCCTTTGATGATCTTTGTCCTCA 416
||| |||||||||||||||||||||||||||||||| |||||||||||||| || |||||
Sbjct 599 TGTACTCTGGTTTGATCGGAATGATCAGAAATGGGCAGCCTTTGATGATCTCTGCCCTCA 658
Query 417 CCGGCTCGCTCCTTTATCTGAAGGAAGGTTGGATGAGAATGGACACTTGCAATGTTCGTA 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 CCGGCTCGCTCCTTTATCTGAAGGAAGGTTGGATGAGAATGGACACTTGCAATGTTCGTA 718
Query 477 TCATGGATGGTCCTTTAGTGGGTGTGGATCTTGTACTAGGATTCCACAGGCTGCTACTTC 536
|||||||||||| ||| |||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 719 TCATGGATGGTCATTTGGTGGGTGTGGATCTTGCACTAGGATTCCTCAGGCTGCTACTTC 778
Query 537 AGGTCCTGAAGCTCGTGCTGTTAAATCCCCGAGAGCTTGCGCTATTAAGTTTCCGACAAT 596
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 779 AGGTCCTGAAGCTCGTGCTGTTAAATCCCCGAGAGCTTGTGCTATTAAGTTCCCGACAAT 838
Query 597 GGTGTCTCAAGGTCTTCTCTTTGTGTGGCCTGATGAAAATGGTTGGGATAGAGCCAATTC 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 GGTGTCTCAAGGTCTTCTCTTTGTGTGGCCTGATGAAAATGGTTGGGATAGAGCCAATTC 898
Query 657 AATTGAACCGCCTAGGTTGCCAGATGATTTTGATAGACCAGAATTTTCGACGGTGACAAT 716
||||||||| ||||||||||| |||||||| |||| ||| ||||||||||||||||||||
Sbjct 899 AATTGAACCCCCTAGGTTGCCGGATGATTTCGATAAACCGGAATTTTCGACGGTGACAAT 958
Query 717 TCAGAGGGATCTTTTCTATGGATATGATACTCTCATGGAAAATGTATCTGATCCTTCCCA 776
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TCAAAGGGATCTTTTCTATGGATATGATACTCTCATGGAAAATGTATCTGATCCTTCCCA 1018
Query 777 TATTGATTTTGCTCATCACAAGGTTACAGGAAGAAGAGACAGAGCCAAACCATTGCCGTT 836
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TATAGATTTTGCTCATCACAAGGTTACAGGAAGAAGAGACAGAGCCAAACCATTGCCGTT 1078
Query 837 CAAGGTGGAGTCAAGTGGGCCTTGGGGTTTCCAAGGTGCGAATGATGACAATCCAAGGAT 896
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1079 CAAGGTGGAGTCAAGTGGGCCTTGGGGTTTCCAAGGTGCGAATGATGACAGTCCAAGGAT 1138
Query 897 AACCGCAAAATTTGTTGCTCCGTGCTATTCTTTGAACAAAATTGAGATCGATGCGAAGCT 956
||||||||||||||||||||||||||||||| |||||||||||||| | |||||||| ||
Sbjct 1139 AACCGCAAAATTTGTTGCTCCGTGCTATTCTATGAACAAAATTGAGTTAGATGCGAAACT 1198
Query 957 ACCAATCTTCGGTAATCAAAAATGGGTAATTTGGATTTGCTCATTTAACATACCAATGGC 1016
||||||| ||||||||||||||||||| ||||||||||||||||| || |||||||||||
Sbjct 1199 ACCAATCGTCGGTAATCAAAAATGGGTCATTTGGATTTGCTCATTCAATATACCAATGGC 1258
Query 1017 TCCAGGAAAGACCCGTTCCATCGTTTGCAGCGCCCGTAACTTCTTCCAATTCTCTGTACC 1076
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1259 TCCAGGAAAGACCCGTTCCATCGTTTGCAGCGCCCGTAACTTCTTTCAGTTCTCTGTACC 1318
Query 1077 AGGACCCGCTTGGTGGCAGGTTGTACCGAGATGGTATGAACACTGGACATCAAACTTGGT 1136
|||||| |||||||||||||||||||| |||||||||||||||||||| || ||||| ||
Sbjct 1319 AGGACCAGCTTGGTGGCAGGTTGTACCAAGATGGTATGAACACTGGACTTCGAACTTAGT 1378
Query 1137 CTATGACGGAGACATGATCGTACTTCAAGGACAAGAGAAAGTATTCCTCTCTAAATCAAT 1196
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1379 CTATGACGGAGACATGATCGTACTTCAAGGACAAGAGAAAGTATTCCTCGCTAAATCAAT 1438
Query 1197 GGAGTCACCGGACTACGACGTGAACAAACAGTACACAAAGCTCACATTCACTCCAACCCA 1256
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 GGAGTCACCAGACTACGACGTGAACAAACAGTACACAAAGCTCACATTCACTCCAACCCA 1498
Query 1257 AGCAGACCGTTTCGTTCTAGCCTTCAGAAACTGGCTTAGACGGCATGGCAAGAGTCAGCC 1316
||||||||||| |||||||| |||||||||||||| ||||||||||| |||||||||||
Sbjct 1499 GGCAGACCGTTTTGTTCTAGCATTCAGAAACTGGCTCAGACGGCATGGTAAGAGTCAGCC 1558
Query 1317 TGAATGGTTCGGCTCCACCACGGCTAACCAACCTCTCCCTTCCACTGTCTTAACCAAGCG 1376
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1559 TGAATGGTTCGGCTCCACCCCGTCTAACCAACCTCTCCCTTCCACTGTCTTAACCAAGCG 1618
Query 1377 TCAGATGCTTGATAGATTTGAGCAGCATACACAAGTGTGTTCATCATGCAAAGGAGCTTA 1436
||||||||| ||||||||||| |||||||||||||| || || || ||||||||||||||
Sbjct 1619 TCAGATGCTAGATAGATTTGATCAGCATACACAAGTATGCTCTTCCTGCAAAGGAGCTTA 1678
Query 1437 CAACAGTTTCCAAATCCTCAAGAAGTTTCTTGTTGGCGCGACGGTTTTCTGGGCCGCCAC 1496
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1679 CAACAGTTTCCAAATCCTCAAGAAGTTTCTCGTTGGCGCGACGGTTTTCTGGGCCGCCAC 1738
Query 1497 TGCTGGTGTTCCTTCTGATGTCCAGATTCGACTGGTTCTGGCGGGTTTATCACTGATATC 1556
|||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||
Sbjct 1739 GGCTGGTGTTCCTTCTGATGTTCAGATTCGACTGGTTCTTGCTGGTTTATCACTGATATC 1798
Query 1557 AGCTGCTTCTGCATATGCTTTACATGAACAAGAGAAGAACTTTGTGTTTAGAGATTATGT 1616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1799 AGCTGCTTCTGCATATGCTTTACATGAACAAGAGAAGAACTTTGTGTTTAGAGATTATGT 1858
Query 1617 CCATTCTGAAATCGAATAGATGTATATGTATGTATATGT 1655
|||||||||||||| ||||| | | ||| ||||||||
Sbjct 1859 ACATTCTGAAATCGAGTAGATTTGT-TGT--GTATATGT 1894
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81776687805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5