BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937163
Length=1669
Score E
Sequences producing significant alignments: (Bits) Value
AT3G45060.1 | Symbols: ATNRT2.6, NRT2.6 | high affinity nitrate... 1155 0.0
AT5G60780.1 | Symbols: ATNRT2.3, NRT2.3 | nitrate transporter 2... 963 0.0
> AT3G45060.1 | Symbols: ATNRT2.6, NRT2.6 | high affinity nitrate
transporter 2.6 | chr3:16477561-16479482 REVERSE LENGTH=1835
Length=1835
Score = 1155 bits (625), Expect = 0.0
Identities = 1324/1653 (80%), Gaps = 81/1653 (5%)
Strand=Plus/Plus
Query 37 ATGATGAAGGCTCTATTGGGACCTCCATGCATGGAGTTACGGCGAGGGAACAAGTCTTCT 96
|||| || ||||||||||| |||||| |||||||||| ||||| ||||| ||||||||||
Sbjct 116 ATGAAGACGGCTCTATTGGAACCTCCTTGCATGGAGTCACGGCAAGGGAGCAAGTCTTCT 175
Query 97 CCTTCTCTGTCGACGGCAATGCTAG-CCATTTGAT-TCAAGTCGTCCGATCGGATGATCC 154
||||||| ||| | | || | | | || || || ||||| ||||||| | | |||||
Sbjct 176 CCTTCTCCGTCCA-AG-AA-GAT-GTCC-CTTCATCTCAAGCCGTCCGAACAAACGATCC 230
Query 155 AACGGCTAAGTTTTCCTTGCCGGTTGACTCAGAACATAGAGCAAAAGTGTTCAAACCATT 214
||||||||||||| || | || || ||||| |||||||| |||||||||||||||||| |
Sbjct 231 AACGGCTAAGTTTGCCCTACCAGTGGACTCCGAACATAGGGCAAAAGTGTTCAAACCACT 290
Query 215 TTCATTCGCCAAACCACACATGAGAGCTTTTCACTTAGGATGGATTTCTTTCTTCACTTG 274
|||||||| |||||||| |||||||| || |||||||||||||| ||||||||||||||
Sbjct 291 ATCATTCGCTAAACCACATATGAGAGCCTTCCACTTAGGATGGATCTCTTTCTTCACTTG 350
Query 275 CTTCATCTCTACTTTTGCCGCCGCACCTCTCGTTCCCATCA-TCAGAGATAACCTCGATT 333
||||||||| || || || ||||||||||| || ||| ||| || | || || |||||
Sbjct 351 CTTCATCTCCACCTTCGCAGCCGCACCTCTAGTCCCCGTCATTC-GCGACAATCTCGACC 409
Query 334 TGACCAAAAATGATATTGGAAACGCCGGAGTCGCCTCGGTTTCCGGCGCTATTTTCTCTA 393
||||||||| || || ||||| || ||||| || || ||||||||||| |||||||| |
Sbjct 410 TGACCAAAACCGACATCGGAAATGCTGGAGTTGCATCAGTTTCCGGCGCCATTTTCTCGA 469
Query 394 GGCTCGCTATGGGAGCTGTTTGTGA-CTTGCTCGGGGCTA-GGTACGGAACGGCGTTTTT 451
| ||||||||||| ||||| ||||| ||| || ||||| | | || ||||| || || |
Sbjct 470 GACTCGCTATGGGTGCTGTATGTGACCTT-CTAGGGGC-ACGTTATGGAACCGCCTTCTC 527
Query 452 GCTGATG-TTATCAGCTCCAACAGTGTTT-AGCATGTCCTTTGTGGCTAACGCTGGTGGC 509
|| ||| ||| |||||||| |||| ||| |||||| || || ||| |||| || ||
Sbjct 528 ACTTATGCTTA-CAGCTCCAGCAGT-TTTCTCCATGTCGTTCGTAGCTGACGCGGGAAGC 585
Query 510 TACTTAGCCGTCCGGTTCATGATTGGTTTTTGTC-TAGCAACGTTCGTGTCATGTCAATA 568
||||||||||| |||||||||| |||||||| | ||||||||||||| |||||||| ||
Sbjct 586 TACTTAGCCGTAAGGTTCATGATCGGTTTTTG-CTTAGCAACGTTCGTATCATGTCAGTA 644
Query 569 TTGGACAAGCGTGATGTTCAAC-GGCAAGATAATCGGACTTGTCAACGGATGTGCCGGAG 627
||||| || || |||||| || || ||||| |||||||| || ||||||||||| ||||
Sbjct 645 CTGGACGAGTGTTATGTTC-ACTGGAAAGATTATCGGACTCGTTAACGGATGTGCTGGAG 703
Query 628 GGTGGGGAGATATGGGAGGAGGAGTGACTCAGCTACTCATGCCAATGGTCTTCAACGTCA 687
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 704 GGTGGGGAGATATGGGAGGAGGAGTGACTCAGCTACTAATGCCAATGGTCTTCCACGTCA 763
Query 688 TCAAACTCGCCGGAGCCAGTCCCTTTGTGGCGTGGAGGATCGCCTTCTTCGTCCCCGGGT 747
|||||||| ||||||||| |||||| ||| |||||| ||||||||||| |||||||
Sbjct 764 TCAAACTCACCGGAGCCACTCCCTTCACGGCTTGGAGGTTCGCCTTCTTCATCCCCGGCA 823
Query 748 TTCTACAGGTCA-TTATGGGCATTCTTGTGCTCACTCTTGGACAAGATCTTCCTGATGGA 806
|||| ||| | | ||||||| ||||| || |||||||| || ||||||||||| |||||
Sbjct 824 TTCTTCAGAT-AGTTATGGGTATTCTCGTTCTCACTCTCGGCCAAGATCTTCCCGATGGT 882
Query 807 AACCTTAGTACTCTACAGAAGAAAGGAGATGTTTCCAAAGACAAGTTCTCCAAGGTATTT 866
||||| |||||||| || |||| || | ||||| |||||||| ||||||||||| |||
Sbjct 883 AACCTCAGTACTCTCCAAAAGAGTGGTCAAGTTTCTAAAGACAAATTCTCCAAGGTCTTT 942
Query 867 TGGTAT-GCTGTGATGAACTATAGAACGTATG--TGTTGTTCCTTCTCTATGGATTTTCC 923
|||| | ||||||| ||||||||||| ||| | || ||| | ||||||||||||||
Sbjct 943 TGGT-TCGCTGTGAAAAACTATAGAAC--ATGGATCTTATTCATGCTCTATGGATTTTCT 999
Query 924 ATGGGAATCGAAATGACCATCAACAATGTTATCTCAG-AGTATTTCTTCGACAGGTTTCA 982
|||||| | ||| | || |||||||| ||||| || | | || |||| ||| |||||| |
Sbjct 1000 ATGGGAGTTGAATTAACGATCAACAACGTTATATCTGGA-TACTTCTACGATAGGTTT-A 1057
Query 983 AC-TT-CAACTTCACACAGCTGGTATGATAGCAGCCAGCTTTGGTATGGCTAACTTCTTC 1040
|| || | ||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1058 ACCTTACG-CTTCACACAGCTGGTATTATAGCAGCCAGCTTTGGTATGGCAAACTTCTTT 1116
Query 1041 GCTCGTCCCCTTGGTGGCTATGCATCTGACAT-GTCTGCTCGGTTTTTCGGTATGAGAGG 1099
|| ||||| |||||||||| || || || | | |||| ||| | ||||||||||| ||
Sbjct 1117 GCCCGTCCTTTTGGTGGCTACGCTTCAGATGTAG-CTGCACGGCTCTTCGGTATGAG-GG 1174
Query 1100 G-CGGTTATGGACCCTT-TGGATTTTACAAACT-TCTGGTGGACT-TTTCTGTGTTTGGC 1155
| |||||||||| | || ||||| ||||||||| | ||| | || ||| || | ||||
Sbjct 1175 GACGGTTATGGATC-TTGTGGATCTTACAAACTGT-TGGAGCTCTCTTT-TGCATCTGGC 1231
Query 1156 TAGGCCGTGCTACTTCACTTCCTATAGCTATTTTAGCCATGATGCTCTTCTC-AGTTGGC 1214
| || ||||||| |||||| ||||||||||| |||||||||||||| || || | | |||
Sbjct 1232 TTGGTCGTGCTAGTTCACTACCTATAGCTATCTTAGCCATGATGCTTTTTTCCA-TGGGC 1290
Query 1215 GTGCAAGCTGCTTGTGGAGCTATCTTCGGCATCGTTCCTTTTGTCTCGCGCCGCTC-CTT 1273
|||||||||||||||||| |||| || | | ||||||||| || ||||| || |||
Sbjct 1291 ACACAAGCTGCTTGTGGAGCTCTCTTTGGTGTTGCTCCTTTTGTTTCCCGCCGTTCTCTT 1350
Query 1274 AGGGCTAATATCAGGACTTACC-GGTGCAGGAGGAAATTTTGGATCGGGACTAACTCAAC 1332
|| || || || ||| ||| | ||||| || ||||||||||| |||||| | |||||||
Sbjct 1351 -GGACTTATCTCGGGA-TTAACTGGTGCTGGTGGAAATTTTGGGTCGGGAGTTACTCAAC 1408
Query 1333 TGAtttttttCTCTTCCTCAAGATTCCAC-ACTGCCGATGG-CTTGTCGCTGATGGGAAT 1390
| |||| ||||||||||| || || | || || || || || ||| ||||||| |
Sbjct 1409 TTCTTTTCTTCTCTTCCTCGAGGTTT-AGTACGGCGGAAGGACTA-TCGTTGATGGGCGT 1466
Query 1391 CATGGCGATGGTTTT-TACGCTTTT--GGTTGCGTTTATACATTTTCCGCAATGGGGAAG 1447
||||| || || | | | || || |||||||||||||||||||||||| ||||||||
Sbjct 1467 TATGGC--TG-TTGTGTGCTCTCTTCCGGTTGCGTTTATACATTTTCCGCAGTGGGGAAG 1523
Query 1448 TATGTTTTTT-GGACCA--ACAAG-TGACGAGAAGAAAGT-ATTGGAAGAGCATTATTAC 1502
||||| || || ||| ||||| || |||| |||| | | |||||||||||| ||
Sbjct 1524 CATGTTCTTGAGG-CCATCACAAGATG--GAGA-GAAA-TCAAAGGAAGAGCATTACTAT 1578
Query 1503 GCAGCCGAGTGGACTGAGGAAGAGAAGCGGCA-AGGATTGCATGAAGGTAGCCTTAAATT 1561
| ||| || ||||| |||||||||||| | | |||| | || ||||| ||| |||||||
Sbjct 1579 GGAGCGGAATGGACAGAGGAAGAGAAGAG-CTTAGGACTACACGAAGGAAGCATTAAATT 1637
Query 1562 TGCAGAGAATAGTCGATCAGAAAGAGGCCGAAAGGCGGCTGT-GGACGG-TGCCTCCA-C 1618
||| || || || || ||||| |||||||| |||||| ||| || | | | |||| |
Sbjct 1638 TGCTGAAAACAGCCGGTCAGAGAGAGGCCGCAAGGCGA-TGTTGG-CTGATAT-TCCAAC 1694
Query 1619 GCCAGAAAATCGAACC-CCGGCTCATGTTTAGT 1650
||| |||| || | | ||||||||||| ||||
Sbjct 1695 GCCGGAAAC-CGGATCTCCGGCTCATGTCTAGT 1726
> AT5G60780.1 | Symbols: ATNRT2.3, NRT2.3 | nitrate transporter
2.3 | chr5:24450839-24452756 FORWARD LENGTH=1620
Length=1620
Score = 963 bits (521), Expect = 0.0
Identities = 1248/1592 (78%), Gaps = 77/1592 (5%)
Strand=Plus/Plus
Query 37 ATGATGAAGGCTCTATTGGGACCTCCATGCATGGAGTTACGGCGAGGGAACAAGTCTTCT 96
|||| |||||||| ||||| |||||| ||||||||||||| || || |||||||||||||
Sbjct 20 ATGAAGAAGGCTCCATTGGAACCTCCTTGCATGGAGTTACAGCAAGAGAACAAGTCTTCT 79
Query 97 CCTTCTCTGTCGACGGCAATGCTAGCCATTTGAT-TCAAGTC-GTCCGATCGGATGATCC 154
||| || || || | | | | | || | | |||| | |||| ||| || |||||
Sbjct 80 -CTT-TC--TC--CGTC---GAT-G-C-TTCG-TCTCAA-ACAGTCCAATCAGACGATCC 125
Query 155 AACGGCTAAGTT-TTCCTTGCCGGTTGACTCAGAACATAGAGCAAAAGTGTTCAAACCAT 213
||| ||||| || |||| |||||||| || |||||| |||| ||||||||||| |||
Sbjct 126 AACAGCTAAATTCGCCCTT-CCGGTTGATTCCGAACATCGAGCCAAAGTGTTCAACCCAC 184
Query 214 TTTCATTCGCCAAACCACACATGAGAGCTTTTCACTTAGGATGGATTTCTTTCTTCACTT 273
| || || || ||||| ||||||||||| || |||||||||||| | || |||||||| |
Sbjct 185 TCTCTTTTGCTAAACCTCACATGAGAGCCTTCCACTTAGGATGGCTCTCATTCTTCACAT 244
Query 274 GCTTCATCTCTACTTTTGCCGCCGCACC-TCTCGTTCCCATCATCAGAGATAACCTCGAT 332
|||||||||| || || || || ||||| | | || ||||||||| | || ||||||||
Sbjct 245 GCTTCATCTCCACCTTCGCGGCAGCACCAT-TAGTCCCCATCATCCGCGACAACCTCGAC 303
Query 333 TTGACCAAAAATGATATTGGAAACGCCGGAGTCGCCTCGGTTTCCGGCGCTATTTTCTCT 392
| || |||| || |||||||||||||||||||| || || || || || ||||||||
Sbjct 304 CTCACTAAAACCGACATTGGAAACGCCGGAGTCGCATCCGTCTCTGGTGCCATTTTCTCA 363
Query 393 AGGCTCGCTATGGGAGCTGTTTGTGACT-TGCTCGGGGCTA-GGTACGGAACGGCGTTTT 450
||| | || |||||||| |||||||| | | ||||| || | | || || || || || |
Sbjct 364 AGGTTAGCCATGGGAGCGGTTTGTGA-TCTCCTCGGTGC-ACGATATGGGACTGCCTTCT 421
Query 451 TGCTGATGTTATCAGCTCCAACAGTGTTTAGC-ATGTCCTTTGTGGCTAACGCTGGTGGC 509
|| ||| || | || ||||| || || | ||||| ||||||| | | || | ||
Sbjct 422 CCCTCATGCTAACCGCCCCAACCGT-CTTCTCAATGTCGTTTGTGGGTGGCCCTAGCGGA 480
Query 510 TACTTAGCCGTCCGGTTCATGATTGGTTTTTGTCTAGCAACGTTCGTGTCATGTCAATAT 569
||||||| ||||||||||||||| || || ||||| || ||||| || ||||| || |||
Sbjct 481 TACTTAGGCGTCCGGTTCATGATCGGATTCTGTCTCGCCACGTTTGTATCATGCCAGTAT 540
Query 570 TGGACAAGCGTGATGTTCAACGGCAAGATAATCGGACTTGTCAACGGATGTGCCGGAGGG 629
||||| ||||| ||||||||||| ||||| || ||||| || ||||| ||||| || |||
Sbjct 541 TGGACCAGCGTTATGTTCAACGGTAAGATCATAGGACTAGTGAACGGCTGTGCAGGCGGG 600
Query 630 TGGGGAGATATGGGAGGAGGAGTGACTCAGCTACTCATGCCAATGGTCTTCAACGTCATC 689
||||| |||||||| || ||||||||||| || || ||||| ||||||||| ||||||||
Sbjct 601 TGGGGTGATATGGGCGGTGGAGTGACTCAACTCCTAATGCCGATGGTCTTCCACGTCATC 660
Query 690 AAACTCGCCGGAGCCAGTCCCTTTGTGGCGTGGAGGATCGCCTTCTTCGTCCCCGGGTTT 749
||||| |||||||||| ||| || |||| ||| |||| || |||||||| ||||| |||
Sbjct 661 AAACTTGCCGGAGCCACTCCGTTCATGGCCTGGCGGATAGCTTTCTTCGTTCCCGGATTT 720
Query 750 CTACAGGTCATTATGGGCATTCTTGTGCTCACTCTTGGACAAGATCTTCCTGATGGAAAC 809
|| || || ||||||||||||| || |||| ||| || |||||||| ||||| || |||
Sbjct 721 CTTCAAGTTGTTATGGGCATTCTCGTCCTCAGTCTCGGCCAAGATCTCCCTGACGGTAAC 780
Query 810 CTTAGTACTCTACAGAAGAAAGGAGATGTTTCCAAAGACAAGTTCTCCAAGGTATTT-TG 868
|| ||||| || ||||||| || | || || |||||||| ||||||||||| ||| ||
Sbjct 781 CTAAGTACCCTTCAGAAGAGTGGTCAAGTCTCTAAAGACAAATTCTCCAAGGT-TTTCTG 839
Query 869 GTATGCTGTGATGAACTATAGAACGTAT-G-TGTTGTTCCTTCTCTATGGATTTTCCATG 926
|| |||||||| |||||| ||||| || | | || ||| |||| ||||||| |||||||
Sbjct 840 GTTTGCTGTGAAGAACTACAGAAC--ATGGATTTTATTCGTTCTTTATGGATCTTCCATG 897
Query 927 GGAATCGAAATGACCATCAACAATGTTATCT-CAGAGTATTTCTT-CGACAGGTTTCAA- 983
||||| ||| | || |||||||| ||||||| | || ||||| || |||||||||| ||
Sbjct 898 GGAATTGAATTAACTATCAACAACGTTATCTCCGGA-TATTT-TTACGACAGGTTT-AAC 954
Query 984 CTTCAA-CTTCACACAGCTGGTATGA-TAGCAGCCAGCTTTGGTATGGCTAACTTCTTCG 1041
||| || ||||| ||||||||||| | |||||||||||||||| |||||||||||| |||
Sbjct 955 CTT-AAGCTTCAAACAGCTGGTAT-AGTAGCAGCCAGCTTTGGAATGGCTAACTTCATCG 1012
Query 1042 CTCGTCCCCTT-GGTGGCTATGCATCTGACATGT--CTGCTC-GGTTTTTCGGTATGAGA 1097
| ||| ||||| ||||| || || |||| |||| | |||| ||||||| || ||||||
Sbjct 1013 CCCGT-CCCTTCGGTGGTTACGCTTCTG--ATGTAGCGGCTCGGGTTTTT-GGCATGAGA 1068
Query 1098 GGGCGGTTATGGACCCTT-TGGAT-TTTACAAA-CTTCTGGTGGACTTTTCTGTGTTTGG 1154
|| |||||||||| |||| ||||| ||| |||| | | || | ||||||||| | |||
Sbjct 1069 GGCCGGTTATGGA-CCTTATGGATCTTT-CAAACCGT-AGGAGCTCTTTTCTGTATCTGG 1125
Query 1155 CTAGGCCGTGCTACTTCACTTCCTATAGCTATTTTAGCCATGATGCTCTTCTCAGTTGGC 1214
||||| || |||| ||||||||| ||||| || |||| ||||||||||||||| | ||
Sbjct 1126 CTAGGTCGAGCTAGTTCACTTCCCATAGCAATCCTAGCAATGATGCTCTTCTCAATCGGT 1185
Query 1215 GTGCAAGCTGCTTGTGGAGCTATCTTCGGCA-TCGTTCCTTTTGTCTCGCGCCGCTCCT- 1272
||||| ||||| ||||| ||||||| | | | ||||||||||||||||||| ||
Sbjct 1186 ACACAAGCAGCTTGCGGAGCCCTCTTCGG-AGTTGCACCTTTTGTCTCGCGCCGCT-CTC 1243
Query 1273 TAGGGCTAATATCAGGACTTACCGGTGCAGGAGGAAATTTTGGATCGGGACTAACTCAAC 1332
||||||| ||||| ||||| ||||| ||||||||||| || || || || | |||||||
Sbjct 1244 TAGGGCTCATATCGGGACTAACCGGCGCAGGAGGAAACTTCGGGTCCGGTTTGACTCAAC 1303
Query 1333 TGAtttttttCTCTTCCTCAAGATTCCA-CACTGCCGATGG-CTTGTCGCTGATGGGAAT 1390
|| |||| ||||| || | || || | || || || || | | || ||||||| |
Sbjct 1304 TGCTTTTCTTCTCATCAGCGAGGTT-TAGTACAGCTGAGGGAC-TCTCATTGATGGGCGT 1361
Query 1391 CATGGCGATGGTTTT-T--ACGCTTTTGGTTGCGTTTATACATTTTCCGCAATGGGGAAG 1447
||||| |||||| | || || ||||||||||||||||||||||||||||||||
Sbjct 1362 TATGGC---GGTTTTGTGCACACTCCCAGTTGCGTTTATACATTTTCCGCAATGGGGAAG 1418
Query 1448 TATGTTTTTTGGACCAACAAGTGACGAGAAGAAAG-T-ATTGGAAGAGCATTATTACGCA 1505
|||||||| |||| | | || | || ||||| | | ||| || |||||||||
Sbjct 1419 CATGTTTTTAAGACCGTCGACCGATG-GA-GAAAGATCACAGGAGGAATATTATTACGGT 1476
Query 1506 GCCGAGTGGACTGAGGAA-GAGAAGCGGCAAGGATTGCATGAAGGTAGCCTTAAATTTGC 1564
| |||||||| ||| || ||||| | ||||||||||| ||||| ||| | ||||||||
Sbjct 1477 TCTGAGTGGACGGAG-AATGAGAAACAACAAGGATTGCACGAAGGAAGCATCAAATTTGC 1535
Query 1565 AGAGAATAGTCGATCAGAAAGAGGCCG-AAAG 1595
|||||||||| | ||||| |||||||| ||||
Sbjct 1536 AGAGAATAGTAGGTCAGAGAGAGGCCGGAAAG 1567
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82479495435
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5