BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg937163 Length=1669 Score E Sequences producing significant alignments: (Bits) Value AT3G45060.1 | Symbols: ATNRT2.6, NRT2.6 | high affinity nitrate... 1155 0.0 AT5G60780.1 | Symbols: ATNRT2.3, NRT2.3 | nitrate transporter 2... 963 0.0 > AT3G45060.1 | Symbols: ATNRT2.6, NRT2.6 | high affinity nitrate transporter 2.6 | chr3:16477561-16479482 REVERSE LENGTH=1835 Length=1835 Score = 1155 bits (625), Expect = 0.0 Identities = 1324/1653 (80%), Gaps = 81/1653 (5%) Strand=Plus/Plus Query 37 ATGATGAAGGCTCTATTGGGACCTCCATGCATGGAGTTACGGCGAGGGAACAAGTCTTCT 96 |||| || ||||||||||| |||||| |||||||||| ||||| ||||| |||||||||| Sbjct 116 ATGAAGACGGCTCTATTGGAACCTCCTTGCATGGAGTCACGGCAAGGGAGCAAGTCTTCT 175 Query 97 CCTTCTCTGTCGACGGCAATGCTAG-CCATTTGAT-TCAAGTCGTCCGATCGGATGATCC 154 ||||||| ||| | | || | | | || || || ||||| ||||||| | | ||||| Sbjct 176 CCTTCTCCGTCCA-AG-AA-GAT-GTCC-CTTCATCTCAAGCCGTCCGAACAAACGATCC 230 Query 155 AACGGCTAAGTTTTCCTTGCCGGTTGACTCAGAACATAGAGCAAAAGTGTTCAAACCATT 214 ||||||||||||| || | || || ||||| |||||||| |||||||||||||||||| | Sbjct 231 AACGGCTAAGTTTGCCCTACCAGTGGACTCCGAACATAGGGCAAAAGTGTTCAAACCACT 290 Query 215 TTCATTCGCCAAACCACACATGAGAGCTTTTCACTTAGGATGGATTTCTTTCTTCACTTG 274 |||||||| |||||||| |||||||| || |||||||||||||| |||||||||||||| Sbjct 291 ATCATTCGCTAAACCACATATGAGAGCCTTCCACTTAGGATGGATCTCTTTCTTCACTTG 350 Query 275 CTTCATCTCTACTTTTGCCGCCGCACCTCTCGTTCCCATCA-TCAGAGATAACCTCGATT 333 ||||||||| || || || ||||||||||| || ||| ||| || | || || ||||| Sbjct 351 CTTCATCTCCACCTTCGCAGCCGCACCTCTAGTCCCCGTCATTC-GCGACAATCTCGACC 409 Query 334 TGACCAAAAATGATATTGGAAACGCCGGAGTCGCCTCGGTTTCCGGCGCTATTTTCTCTA 393 ||||||||| || || ||||| || ||||| || || ||||||||||| |||||||| | Sbjct 410 TGACCAAAACCGACATCGGAAATGCTGGAGTTGCATCAGTTTCCGGCGCCATTTTCTCGA 469 Query 394 GGCTCGCTATGGGAGCTGTTTGTGA-CTTGCTCGGGGCTA-GGTACGGAACGGCGTTTTT 451 | ||||||||||| ||||| ||||| ||| || ||||| | | || ||||| || || | Sbjct 470 GACTCGCTATGGGTGCTGTATGTGACCTT-CTAGGGGC-ACGTTATGGAACCGCCTTCTC 527 Query 452 GCTGATG-TTATCAGCTCCAACAGTGTTT-AGCATGTCCTTTGTGGCTAACGCTGGTGGC 509 || ||| ||| |||||||| |||| ||| |||||| || || ||| |||| || || Sbjct 528 ACTTATGCTTA-CAGCTCCAGCAGT-TTTCTCCATGTCGTTCGTAGCTGACGCGGGAAGC 585 Query 510 TACTTAGCCGTCCGGTTCATGATTGGTTTTTGTC-TAGCAACGTTCGTGTCATGTCAATA 568 ||||||||||| |||||||||| |||||||| | ||||||||||||| |||||||| || Sbjct 586 TACTTAGCCGTAAGGTTCATGATCGGTTTTTG-CTTAGCAACGTTCGTATCATGTCAGTA 644 Query 569 TTGGACAAGCGTGATGTTCAAC-GGCAAGATAATCGGACTTGTCAACGGATGTGCCGGAG 627 ||||| || || |||||| || || ||||| |||||||| || ||||||||||| |||| Sbjct 645 CTGGACGAGTGTTATGTTC-ACTGGAAAGATTATCGGACTCGTTAACGGATGTGCTGGAG 703 Query 628 GGTGGGGAGATATGGGAGGAGGAGTGACTCAGCTACTCATGCCAATGGTCTTCAACGTCA 687 ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| Sbjct 704 GGTGGGGAGATATGGGAGGAGGAGTGACTCAGCTACTAATGCCAATGGTCTTCCACGTCA 763 Query 688 TCAAACTCGCCGGAGCCAGTCCCTTTGTGGCGTGGAGGATCGCCTTCTTCGTCCCCGGGT 747 |||||||| ||||||||| |||||| ||| |||||| ||||||||||| ||||||| Sbjct 764 TCAAACTCACCGGAGCCACTCCCTTCACGGCTTGGAGGTTCGCCTTCTTCATCCCCGGCA 823 Query 748 TTCTACAGGTCA-TTATGGGCATTCTTGTGCTCACTCTTGGACAAGATCTTCCTGATGGA 806 |||| ||| | | ||||||| ||||| || |||||||| || ||||||||||| ||||| Sbjct 824 TTCTTCAGAT-AGTTATGGGTATTCTCGTTCTCACTCTCGGCCAAGATCTTCCCGATGGT 882 Query 807 AACCTTAGTACTCTACAGAAGAAAGGAGATGTTTCCAAAGACAAGTTCTCCAAGGTATTT 866 ||||| |||||||| || |||| || | ||||| |||||||| ||||||||||| ||| Sbjct 883 AACCTCAGTACTCTCCAAAAGAGTGGTCAAGTTTCTAAAGACAAATTCTCCAAGGTCTTT 942 Query 867 TGGTAT-GCTGTGATGAACTATAGAACGTATG--TGTTGTTCCTTCTCTATGGATTTTCC 923 |||| | ||||||| ||||||||||| ||| | || ||| | |||||||||||||| Sbjct 943 TGGT-TCGCTGTGAAAAACTATAGAAC--ATGGATCTTATTCATGCTCTATGGATTTTCT 999 Query 924 ATGGGAATCGAAATGACCATCAACAATGTTATCTCAG-AGTATTTCTTCGACAGGTTTCA 982 |||||| | ||| | || |||||||| ||||| || | | || |||| ||| |||||| | Sbjct 1000 ATGGGAGTTGAATTAACGATCAACAACGTTATATCTGGA-TACTTCTACGATAGGTTT-A 1057 Query 983 AC-TT-CAACTTCACACAGCTGGTATGATAGCAGCCAGCTTTGGTATGGCTAACTTCTTC 1040 || || | ||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 1058 ACCTTACG-CTTCACACAGCTGGTATTATAGCAGCCAGCTTTGGTATGGCAAACTTCTTT 1116 Query 1041 GCTCGTCCCCTTGGTGGCTATGCATCTGACAT-GTCTGCTCGGTTTTTCGGTATGAGAGG 1099 || ||||| |||||||||| || || || | | |||| ||| | ||||||||||| || Sbjct 1117 GCCCGTCCTTTTGGTGGCTACGCTTCAGATGTAG-CTGCACGGCTCTTCGGTATGAG-GG 1174 Query 1100 G-CGGTTATGGACCCTT-TGGATTTTACAAACT-TCTGGTGGACT-TTTCTGTGTTTGGC 1155 | |||||||||| | || ||||| ||||||||| | ||| | || ||| || | |||| Sbjct 1175 GACGGTTATGGATC-TTGTGGATCTTACAAACTGT-TGGAGCTCTCTTT-TGCATCTGGC 1231 Query 1156 TAGGCCGTGCTACTTCACTTCCTATAGCTATTTTAGCCATGATGCTCTTCTC-AGTTGGC 1214 | || ||||||| |||||| ||||||||||| |||||||||||||| || || | | ||| Sbjct 1232 TTGGTCGTGCTAGTTCACTACCTATAGCTATCTTAGCCATGATGCTTTTTTCCA-TGGGC 1290 Query 1215 GTGCAAGCTGCTTGTGGAGCTATCTTCGGCATCGTTCCTTTTGTCTCGCGCCGCTC-CTT 1273 |||||||||||||||||| |||| || | | ||||||||| || ||||| || ||| Sbjct 1291 ACACAAGCTGCTTGTGGAGCTCTCTTTGGTGTTGCTCCTTTTGTTTCCCGCCGTTCTCTT 1350 Query 1274 AGGGCTAATATCAGGACTTACC-GGTGCAGGAGGAAATTTTGGATCGGGACTAACTCAAC 1332 || || || || ||| ||| | ||||| || ||||||||||| |||||| | ||||||| Sbjct 1351 -GGACTTATCTCGGGA-TTAACTGGTGCTGGTGGAAATTTTGGGTCGGGAGTTACTCAAC 1408 Query 1333 TGAtttttttCTCTTCCTCAAGATTCCAC-ACTGCCGATGG-CTTGTCGCTGATGGGAAT 1390 | |||| ||||||||||| || || | || || || || || ||| ||||||| | Sbjct 1409 TTCTTTTCTTCTCTTCCTCGAGGTTT-AGTACGGCGGAAGGACTA-TCGTTGATGGGCGT 1466 Query 1391 CATGGCGATGGTTTT-TACGCTTTT--GGTTGCGTTTATACATTTTCCGCAATGGGGAAG 1447 ||||| || || | | | || || |||||||||||||||||||||||| |||||||| Sbjct 1467 TATGGC--TG-TTGTGTGCTCTCTTCCGGTTGCGTTTATACATTTTCCGCAGTGGGGAAG 1523 Query 1448 TATGTTTTTT-GGACCA--ACAAG-TGACGAGAAGAAAGT-ATTGGAAGAGCATTATTAC 1502 ||||| || || ||| ||||| || |||| |||| | | |||||||||||| || Sbjct 1524 CATGTTCTTGAGG-CCATCACAAGATG--GAGA-GAAA-TCAAAGGAAGAGCATTACTAT 1578 Query 1503 GCAGCCGAGTGGACTGAGGAAGAGAAGCGGCA-AGGATTGCATGAAGGTAGCCTTAAATT 1561 | ||| || ||||| |||||||||||| | | |||| | || ||||| ||| ||||||| Sbjct 1579 GGAGCGGAATGGACAGAGGAAGAGAAGAG-CTTAGGACTACACGAAGGAAGCATTAAATT 1637 Query 1562 TGCAGAGAATAGTCGATCAGAAAGAGGCCGAAAGGCGGCTGT-GGACGG-TGCCTCCA-C 1618 ||| || || || || ||||| |||||||| |||||| ||| || | | | |||| | Sbjct 1638 TGCTGAAAACAGCCGGTCAGAGAGAGGCCGCAAGGCGA-TGTTGG-CTGATAT-TCCAAC 1694 Query 1619 GCCAGAAAATCGAACC-CCGGCTCATGTTTAGT 1650 ||| |||| || | | ||||||||||| |||| Sbjct 1695 GCCGGAAAC-CGGATCTCCGGCTCATGTCTAGT 1726 > AT5G60780.1 | Symbols: ATNRT2.3, NRT2.3 | nitrate transporter 2.3 | chr5:24450839-24452756 FORWARD LENGTH=1620 Length=1620 Score = 963 bits (521), Expect = 0.0 Identities = 1248/1592 (78%), Gaps = 77/1592 (5%) Strand=Plus/Plus Query 37 ATGATGAAGGCTCTATTGGGACCTCCATGCATGGAGTTACGGCGAGGGAACAAGTCTTCT 96 |||| |||||||| ||||| |||||| ||||||||||||| || || ||||||||||||| Sbjct 20 ATGAAGAAGGCTCCATTGGAACCTCCTTGCATGGAGTTACAGCAAGAGAACAAGTCTTCT 79 Query 97 CCTTCTCTGTCGACGGCAATGCTAGCCATTTGAT-TCAAGTC-GTCCGATCGGATGATCC 154 ||| || || || | | | | | || | | |||| | |||| ||| || ||||| Sbjct 80 -CTT-TC--TC--CGTC---GAT-G-C-TTCG-TCTCAA-ACAGTCCAATCAGACGATCC 125 Query 155 AACGGCTAAGTT-TTCCTTGCCGGTTGACTCAGAACATAGAGCAAAAGTGTTCAAACCAT 213 ||| ||||| || |||| |||||||| || |||||| |||| ||||||||||| ||| Sbjct 126 AACAGCTAAATTCGCCCTT-CCGGTTGATTCCGAACATCGAGCCAAAGTGTTCAACCCAC 184 Query 214 TTTCATTCGCCAAACCACACATGAGAGCTTTTCACTTAGGATGGATTTCTTTCTTCACTT 273 | || || || ||||| ||||||||||| || |||||||||||| | || |||||||| | Sbjct 185 TCTCTTTTGCTAAACCTCACATGAGAGCCTTCCACTTAGGATGGCTCTCATTCTTCACAT 244 Query 274 GCTTCATCTCTACTTTTGCCGCCGCACC-TCTCGTTCCCATCATCAGAGATAACCTCGAT 332 |||||||||| || || || || ||||| | | || ||||||||| | || |||||||| Sbjct 245 GCTTCATCTCCACCTTCGCGGCAGCACCAT-TAGTCCCCATCATCCGCGACAACCTCGAC 303 Query 333 TTGACCAAAAATGATATTGGAAACGCCGGAGTCGCCTCGGTTTCCGGCGCTATTTTCTCT 392 | || |||| || |||||||||||||||||||| || || || || || |||||||| Sbjct 304 CTCACTAAAACCGACATTGGAAACGCCGGAGTCGCATCCGTCTCTGGTGCCATTTTCTCA 363 Query 393 AGGCTCGCTATGGGAGCTGTTTGTGACT-TGCTCGGGGCTA-GGTACGGAACGGCGTTTT 450 ||| | || |||||||| |||||||| | | ||||| || | | || || || || || | Sbjct 364 AGGTTAGCCATGGGAGCGGTTTGTGA-TCTCCTCGGTGC-ACGATATGGGACTGCCTTCT 421 Query 451 TGCTGATGTTATCAGCTCCAACAGTGTTTAGC-ATGTCCTTTGTGGCTAACGCTGGTGGC 509 || ||| || | || ||||| || || | ||||| ||||||| | | || | || Sbjct 422 CCCTCATGCTAACCGCCCCAACCGT-CTTCTCAATGTCGTTTGTGGGTGGCCCTAGCGGA 480 Query 510 TACTTAGCCGTCCGGTTCATGATTGGTTTTTGTCTAGCAACGTTCGTGTCATGTCAATAT 569 ||||||| ||||||||||||||| || || ||||| || ||||| || ||||| || ||| Sbjct 481 TACTTAGGCGTCCGGTTCATGATCGGATTCTGTCTCGCCACGTTTGTATCATGCCAGTAT 540 Query 570 TGGACAAGCGTGATGTTCAACGGCAAGATAATCGGACTTGTCAACGGATGTGCCGGAGGG 629 ||||| ||||| ||||||||||| ||||| || ||||| || ||||| ||||| || ||| Sbjct 541 TGGACCAGCGTTATGTTCAACGGTAAGATCATAGGACTAGTGAACGGCTGTGCAGGCGGG 600 Query 630 TGGGGAGATATGGGAGGAGGAGTGACTCAGCTACTCATGCCAATGGTCTTCAACGTCATC 689 ||||| |||||||| || ||||||||||| || || ||||| ||||||||| |||||||| Sbjct 601 TGGGGTGATATGGGCGGTGGAGTGACTCAACTCCTAATGCCGATGGTCTTCCACGTCATC 660 Query 690 AAACTCGCCGGAGCCAGTCCCTTTGTGGCGTGGAGGATCGCCTTCTTCGTCCCCGGGTTT 749 ||||| |||||||||| ||| || |||| ||| |||| || |||||||| ||||| ||| Sbjct 661 AAACTTGCCGGAGCCACTCCGTTCATGGCCTGGCGGATAGCTTTCTTCGTTCCCGGATTT 720 Query 750 CTACAGGTCATTATGGGCATTCTTGTGCTCACTCTTGGACAAGATCTTCCTGATGGAAAC 809 || || || ||||||||||||| || |||| ||| || |||||||| ||||| || ||| Sbjct 721 CTTCAAGTTGTTATGGGCATTCTCGTCCTCAGTCTCGGCCAAGATCTCCCTGACGGTAAC 780 Query 810 CTTAGTACTCTACAGAAGAAAGGAGATGTTTCCAAAGACAAGTTCTCCAAGGTATTT-TG 868 || ||||| || ||||||| || | || || |||||||| ||||||||||| ||| || Sbjct 781 CTAAGTACCCTTCAGAAGAGTGGTCAAGTCTCTAAAGACAAATTCTCCAAGGT-TTTCTG 839 Query 869 GTATGCTGTGATGAACTATAGAACGTAT-G-TGTTGTTCCTTCTCTATGGATTTTCCATG 926 || |||||||| |||||| ||||| || | | || ||| |||| ||||||| ||||||| Sbjct 840 GTTTGCTGTGAAGAACTACAGAAC--ATGGATTTTATTCGTTCTTTATGGATCTTCCATG 897 Query 927 GGAATCGAAATGACCATCAACAATGTTATCT-CAGAGTATTTCTT-CGACAGGTTTCAA- 983 ||||| ||| | || |||||||| ||||||| | || ||||| || |||||||||| || Sbjct 898 GGAATTGAATTAACTATCAACAACGTTATCTCCGGA-TATTT-TTACGACAGGTTT-AAC 954 Query 984 CTTCAA-CTTCACACAGCTGGTATGA-TAGCAGCCAGCTTTGGTATGGCTAACTTCTTCG 1041 ||| || ||||| ||||||||||| | |||||||||||||||| |||||||||||| ||| Sbjct 955 CTT-AAGCTTCAAACAGCTGGTAT-AGTAGCAGCCAGCTTTGGAATGGCTAACTTCATCG 1012 Query 1042 CTCGTCCCCTT-GGTGGCTATGCATCTGACATGT--CTGCTC-GGTTTTTCGGTATGAGA 1097 | ||| ||||| ||||| || || |||| |||| | |||| ||||||| || |||||| Sbjct 1013 CCCGT-CCCTTCGGTGGTTACGCTTCTG--ATGTAGCGGCTCGGGTTTTT-GGCATGAGA 1068 Query 1098 GGGCGGTTATGGACCCTT-TGGAT-TTTACAAA-CTTCTGGTGGACTTTTCTGTGTTTGG 1154 || |||||||||| |||| ||||| ||| |||| | | || | ||||||||| | ||| Sbjct 1069 GGCCGGTTATGGA-CCTTATGGATCTTT-CAAACCGT-AGGAGCTCTTTTCTGTATCTGG 1125 Query 1155 CTAGGCCGTGCTACTTCACTTCCTATAGCTATTTTAGCCATGATGCTCTTCTCAGTTGGC 1214 ||||| || |||| ||||||||| ||||| || |||| ||||||||||||||| | || Sbjct 1126 CTAGGTCGAGCTAGTTCACTTCCCATAGCAATCCTAGCAATGATGCTCTTCTCAATCGGT 1185 Query 1215 GTGCAAGCTGCTTGTGGAGCTATCTTCGGCA-TCGTTCCTTTTGTCTCGCGCCGCTCCT- 1272 ||||| ||||| ||||| ||||||| | | | ||||||||||||||||||| || Sbjct 1186 ACACAAGCAGCTTGCGGAGCCCTCTTCGG-AGTTGCACCTTTTGTCTCGCGCCGCT-CTC 1243 Query 1273 TAGGGCTAATATCAGGACTTACCGGTGCAGGAGGAAATTTTGGATCGGGACTAACTCAAC 1332 ||||||| ||||| ||||| ||||| ||||||||||| || || || || | ||||||| Sbjct 1244 TAGGGCTCATATCGGGACTAACCGGCGCAGGAGGAAACTTCGGGTCCGGTTTGACTCAAC 1303 Query 1333 TGAtttttttCTCTTCCTCAAGATTCCA-CACTGCCGATGG-CTTGTCGCTGATGGGAAT 1390 || |||| ||||| || | || || | || || || || | | || ||||||| | Sbjct 1304 TGCTTTTCTTCTCATCAGCGAGGTT-TAGTACAGCTGAGGGAC-TCTCATTGATGGGCGT 1361 Query 1391 CATGGCGATGGTTTT-T--ACGCTTTTGGTTGCGTTTATACATTTTCCGCAATGGGGAAG 1447 ||||| |||||| | || || |||||||||||||||||||||||||||||||| Sbjct 1362 TATGGC---GGTTTTGTGCACACTCCCAGTTGCGTTTATACATTTTCCGCAATGGGGAAG 1418 Query 1448 TATGTTTTTTGGACCAACAAGTGACGAGAAGAAAG-T-ATTGGAAGAGCATTATTACGCA 1505 |||||||| |||| | | || | || ||||| | | ||| || ||||||||| Sbjct 1419 CATGTTTTTAAGACCGTCGACCGATG-GA-GAAAGATCACAGGAGGAATATTATTACGGT 1476 Query 1506 GCCGAGTGGACTGAGGAA-GAGAAGCGGCAAGGATTGCATGAAGGTAGCCTTAAATTTGC 1564 | |||||||| ||| || ||||| | ||||||||||| ||||| ||| | |||||||| Sbjct 1477 TCTGAGTGGACGGAG-AATGAGAAACAACAAGGATTGCACGAAGGAAGCATCAAATTTGC 1535 Query 1565 AGAGAATAGTCGATCAGAAAGAGGCCG-AAAG 1595 |||||||||| | ||||| |||||||| |||| Sbjct 1536 AGAGAATAGTAGGTCAGAGAGAGGCCGGAAAG 1567 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 82479495435 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5