BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937166
Length=286
Score E
Sequences producing significant alignments: (Bits) Value
AT3G45093.1 | Symbols: | Defensin-like (DEFL) family protein |... 279 7e-75
> AT3G45093.1 | Symbols: | Defensin-like (DEFL) family protein
| chr3:16496811-16497290 FORWARD LENGTH=243
Length=243
Score = 279 bits (151), Expect = 7e-75
Identities = 192/211 (91%), Gaps = 6/211 (3%)
Strand=Plus/Plus
Query 24 ATGAAAAGCATTTCATTTATACTTTTGTTATTAGTTTCTCTTCTAGTCGTCGTTTCTCGA 83
|||| |||||||||||| | |||||||||||| ||||||||||| |||||||||||||||
Sbjct 1 ATGAGAAGCATTTCATTCAAACTTTTGTTATTGGTTTCTCTTCTTGTCGTCGTTTCTCGA 60
Query 84 CACACTCTTGCGTATGAAGATTCTTGTTCGACAGATGAAGAATGCAGAAAAAACTGCCTA 143
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 61 TACACTCTTGCGTATGAAGATTCTTGTTCGACAGATGAAGAATGCAGAAGAAACTGCCTA 120
Query 144 TGTGATGTAGCGTATTGCGACAAAAGCCGTGATAAGTGTGATTATGGATTTCATGTTATG 203
||||||||||| |||||||||||||||||||||||||| |||||||||||| ||| |
Sbjct 121 TGTGATGTAGCATATTGCGACAAAAGCCGTGATAAGTGCGATTATGGATTT-ATG--A-- 175
Query 204 AATAAAGTTGATGTCGGTTTTTTCAAACATC 234
| || |||||||||| ||||| ||||||||
Sbjct 176 A-TAGAGTTGATGTCCGTTTTCCCAAACATC 205
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13170150238
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5