BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937168
Length=698
Score E
Sequences producing significant alignments: (Bits) Value
AT3G45110.1 | Symbols: | unknown protein; Has 7 Blast hits to ... 363 2e-99
> AT3G45110.1 | Symbols: | unknown protein; Has 7 Blast hits to
7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr3:16508170-16508532 FORWARD LENGTH=363
Length=363
Score = 363 bits (196), Expect = 2e-99
Identities = 307/358 (86%), Gaps = 18/358 (5%)
Strand=Plus/Plus
Query 313 CATTTTAC-AGACACAAGTGGTGTTGTTTATCATAACAATTACAACGT-TACTATTGATA 370
|||| ||| | ||||||| |||||||||| |||||||||||||||| | |||||||||||
Sbjct 19 CATTGTACTA-ACACAAGCGGTGTTGTTTGTCATAACAATTACAAC-TGTACTATTGATA 76
Query 371 ACTCTATCCATTATGCGGACACAAGTGGTGTTGTCAGCCATCAGCGAGAGAATATTACTG 430
||||||||||||||||||| ||| |||||||||| |||||||| ||||||||||||||||
Sbjct 77 ACTCTATCCATTATGCGGATACACGTGGTGTTGTTAGCCATCACCGAGAGAATATTACTG 136
Query 431 GTCATCATGGACTGGTATTCCCGACGGCTGCAATGACCG-AGTATGGTCCTTCAACTAGT 489
| ||||||||||||||||| ||| ||||| |||||| || | ||||||||| ||||||||
Sbjct 137 GCCATCATGGACTGGTATTTCCGGCGGCTACAATGAACGGA-TATGGTCCTGCAACTAGT 195
Query 490 TTTCCGGCGAAGGATATGAGGGAAAATGGGCACTTGATGGTTAATCATAACAGCCGCCCT 549
||||| | | |||||||||||||||||||||||||||| ||||| || || | | |
Sbjct 196 TTTCC----A-G-ATATGAGGGAAAATGGGCACTTGATGGTGAATCAAAATAGAC-C--T 246
Query 550 GTTATGCTACGACCATCAATG-CCTCAACAGCAACCCCAGCCGCAACCACTGTTTGATGA 608
|| | |||||||||||||||| || || |||||||| || || |||||||||| ||||||
Sbjct 247 GTGACGCTACGACCATCAATGTCC-CAGCAGCAACCACAACCACAACCACTGTCTGATGA 305
Query 609 GTTTAATAAGGTGGAGATGGGGAATTCTAAGCAAGCC-ATGTCTCCTCACAAGACTAA 665
|| |||||||||||||| ||||| | || |||||| | ||||| |||| | |||||||
Sbjct 306 GTATAATAAGGTGGAGACGGGGACTGCTGAGCAAGTCTATGTCCCCTCTCGAGACTAA 363
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33807580931
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5