BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937171
Length=2319
Score E
Sequences producing significant alignments: (Bits) Value
AT3G45130.1 | Symbols: LAS1 | lanosterol synthase 1 | chr3:1651... 3371 0.0
> AT3G45130.1 | Symbols: LAS1 | lanosterol synthase 1 | chr3:16512271-16517522
REVERSE LENGTH=2552
Length=2552
Score = 3371 bits (1825), Expect = 0.0
Identities = 2124/2271 (94%), Gaps = 10/2271 (0%)
Strand=Plus/Plus
Query 21 ATGTGGAGGTTAAAGTTATCGGAAGGAGACGAAGAGAGTGTGAATCAACATGTTGGAAGA 80
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGTGGAGGTTAAAGTTATCGGAAGGAGACGAAGAGAGCGTGAATCAACATGTTGGAAGA 60
Query 81 CAGTTTTGGGAGTATGATAACCAATATGGAACCTCTGAAGAGAGACATCACA-TCGCCGA 139
||||||||||| ||||||||||||| |||||||||||||||||||||||||| | || |
Sbjct 61 CAGTTTTGGGAATATGATAACCAATTTGGAACCTCTGAAGAGAGACATCACATTAACC-A 119
Query 140 TCTTCGGGGCAACTTTACTCTCAATCGGTTTTCTTCTAAGCATAGTTCTGATCTTCTCTA 199
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TCTTCGTAGCAACTTTACTCTCAATCGGTTTTCTTCTAAGCATAGTTCTGATCTTCTCTA 179
Query 200 CCGTTTTCAGTGTTggaaagaggaaggaaaaggaaaggagaggcttccacaagtgaaagt 259
|||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||
Sbjct 180 CCGTTTTCAGTGTTGGAAAGAGAAAGGAAAAGGAATGGAGAGACTTCCACAAGTGAAAGT 239
Query 260 aaaagaggggggagaaggagAGATAAATGAAGAAGTGGTGAATGTAACATTAAGAAGAAG 319
||||||||||| |||| || |||||||||||||||||||||||| ||||||||||||||
Sbjct 240 AAAAGAGGGGGAAGAAAGATTGATAAATGAAGAAGTGGTGAATGTTACATTAAGAAGAAG 299
Query 320 TTTGAGATTCTACTCAACACTTCAATCACAAGATGGGTTTTGGCCTGGTGATTATGGTGG 379
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 300 TTTGAGATTCTACTCAATACTTCAATCACAAGATGGTTTTTGGCCTGGTGATTATGGTGG 359
Query 380 CCCTTTGTTTCTCTCGCCTGCTCTGGTGATCAGCTTATATGTGACAGAAGTTTTAGACGC 439
|||||||||||||| |||||||||||||||| ||||||||||||| |||||||| || |
Sbjct 360 CCCTTTGTTTCTCTTGCCTGCTCTGGTGATCGGCTTATATGTGACGGAAGTTTTGGATGG 419
Query 440 AACTTTAACTGCTCAACATCAAATGGAGATTCGTCGTTATCTCTATAACCATCAGAACAA 499
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 420 AACTTTAACTGCGCAACATCAAATCGAGATTCGTCGTTATCTCTATAACCATCAGAACAA 479
Query 500 GGATGGAGGATGGGGACTACACATAGAAGGGAGTAGCACCATGTTCTGTACGGCT-CTCT 558
|||||||||||||||||||||| ||||||||| |||||||||||| ||||| | | ||||
Sbjct 480 GGATGGAGGATGGGGACTACACGTAGAAGGGAATAGCACCATGTTTTGTACAG-TGCTCT 538
Query 559 CATACGTAGCACTAAGGCTCATGGGGGAAGAAATGGACGGTGGAGATGGAGCCATGGAAT 618
||||||||||||| || || |||||||||||| | |||||||||||||||||||||||||
Sbjct 539 CATACGTAGCACTGAGACTAATGGGGGAAGAATTAGACGGTGGAGATGGAGCCATGGAAT 598
Query 619 CAGCTAGACTTTGGATTCACCACCGTGGTGGTGCCACCTTTGTTCCCTCTTGGGGCAAGT 678
|||||||| |||||||||||||| ||||||||||| ||| ||||||| ||||||||||
Sbjct 599 CAGCTAGAAGTTGGATTCACCACCACGGTGGTGCCACTTTTATTCCCTCCTGGGGCAAGT 658
Query 679 TCTGGCTCTCCGTTCTTGGAGCTTATGAATGGAGTGGCAACAATCCTTTACCTCCAGAGC 738
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 659 TCTGGCTCTCCGTTCTTGGAGCTTATGAGTGGAGTGGGAACAATCCTTTACCTCCAGAGC 718
Query 739 TATGGCTCCTTCCTTATAGTCTTCCATTTCATCCAGGCCGAATGTGGTGCCATTGTAGGA 798
||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 719 TATGGCTCCTTCCATATAGTCTTCCTTTTCATCCGGGCCGAATGTGGTGCCATTGTAGGA 778
Query 799 TGGTTTATCTTCCAATGTCATATCTATACGGAAGAAGATTTGTTTGTCGCACTAATGGAA 858
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 779 TGGTTTATCTTCCAATGTCATATCTATATGGAAGAAGATTTGTTTGTCGTACTAATGGAA 838
Query 859 CTATTTTGTCCCTTCGACGAGAGCTTTACACTGTTCCTTATCATCATATCGATTGGGACA 918
||||||| || |||||||||||||| |||||| |||||||||| ||||||||||||||||
Sbjct 839 CTATTTTATCGCTTCGACGAGAGCTCTACACTATTCCTTATCACCATATCGATTGGGACA 898
Query 919 CGGCTCGTAATCAATGTGCCAAGGAGGACTTGTACTATCCACATCCAAAGATTCAAGACG 978
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 CCGCCCGTAATCAATGTGCCAAGGAGGACTTGTACTATCCACATCCAAAGATTCAAGACG 958
Query 979 TTCTTTGGAGTTGTCTGAATAAATTTGGAGAGCCTCTTCTTGAAAGATGGCCATTGAATA 1038
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TCCTTTGGAGTTGTCTGAATAAATTTGGAGAGCCTCTTCTTGAAAGATGGCCATTGAATA 1018
Query 1039 AGCTAAGAAGCCGGGCTCTTCAGACAGTGATGCAACATATTCAATATGAAGACCAAAACA 1098
| || |||| || |||||||||||||| |||||||| ||||| ||||||||||||||||
Sbjct 1019 ACCTCAGAAACCATGCTCTTCAGACAGTAATGCAACACATTCACTATGAAGACCAAAACA 1078
Query 1099 GCCACTATATTTGTATCGGTCCTGTCAATAAAGTCTTGAATCTTCTTTGTTGTTGGGTTG 1158
|||||||||||||||||||||||||||| |||||||||||| | |||||||||||||| |
Sbjct 1079 GCCACTATATTTGTATCGGTCCTGTCAACAAAGTCTTGAATATGCTTTGTTGTTGGGTCG 1138
Query 1159 ATTCCTCGAATTCCGAGGCATTTAAATCTCACCTCTCGCGTATTAAAGACTATTTATGGG 1218
| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1139 AGTCCTCGAATTCCGAGGCATTTAAATCTCACCTCTCGCGGATTAAAGACTATTTGTGGG 1198
Query 1219 TGGCTGAGGATGGAATGAAAATGCAGGGATACAACGGATCTCAGCTGTGGGACGTGACTT 1278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TGGCTGAGGATGGAATGAAAATGCAGGGATACAACGGATCTCAGCTGTGGGACGTGACTT 1258
Query 1279 TAGCGGTCCAAGCAATCTTGGCTACGAATTTGGTTGATGAGTATGATTTGATGCTTAAGA 1338
|||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||
Sbjct 1259 TAGCGGTCCAAGCAATCTTGGCGACGAATTTGGTTGATGACTATGGTTTGATGCTTAAGA 1318
Query 1339 GAGCGCATAACTACATCAAGAACACTCAAATAAGGAAAGACACTTA-TGGAGATCCGGGG 1397
||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1319 AAGCCCATAACTACATCAAGAACACTCAAATAAGGAAAGACACA-AGTGGAGATCCGGGG 1377
Query 1398 TTGTGGTACCGACACCCGTGCAAGGGAGGATGGGGTTTCTCCACCGCAGACAATCCATGG 1457
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1378 TTGTGGTACCGACACCCGTGCAAGGGAGGATGGGGTTTCTCCACTGGAGACAATCCATGG 1437
Query 1458 CCTGTTTCTGACTGTACTGCTGAAGCCTTGAAGGCGTCGTTGTTATTGTCACAGATACCA 1517
||||| ||||| |||||||||||||||||||||||| ||||| |||||||||| || ||
Sbjct 1438 CCTGTCTCTGATTGTACTGCTGAAGCCTTGAAGGCGGCGTTGCTATTGTCACAAATGCCG 1497
Query 1518 GTTGATTTGGTTGGAGAAGCCATGCCTGAAGAGCATTTATTTGATGCTGTTGACTTTATC 1577
||| |||| ||||||||| |||||||||||||||||||| |||||||||| ||||||||
Sbjct 1498 GTTAATTTAGTTGGAGAACCCATGCCTGAAGAGCATTTAGTTGATGCTGTAAACTTTATC 1557
Query 1578 TTATCATTACAGAACAACAATGGGGGATTTGCGTCATACGAGCTAACTAGATCATATCCC 1637
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1558 TTATCATTACAGAACAAGAATGGGGGATTTGCGTCATATGAGCTAACTAGATCATATCCC 1617
Query 1638 GCGCTAGAGGTGATCAATCCATCAGAGACTTTTGGGGATATCATCATAGATTATCAATAC 1697
| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 GAGCTAGAGGTTATCAACCCATCAGAGACTTTTGGGGATATCATCATAGATTATCAATAC 1677
Query 1698 GTAGAATGTACGTCAGCTGCAATCCAAGGTCTTGCGTTATTCACAACGATCAATCCAA-C 1756
|||||||| ||||||||||| ||||||||||| | ||||||||||||| | ||| | | |
Sbjct 1678 GTAGAATGCACGTCAGCTGCCATCCAAGGTCTCGTGTTATTCACAACGTTAAATTCGAGC 1737
Query 1757 ATACAAGAGGAAAGAGATACTAATATGCATTAACAAAGCAGTTGAGTTTATTGAAAAAAC 1816
||||||||||| |||||| || | |||| |||||||||||||||||||||||||||||
Sbjct 1738 -TACAAGAGGAAGGAGATAGTAGGAAGCATCAACAAAGCAGTTGAGTTTATTGAAAAAAC 1796
Query 1817 ACAACTTCCGGATGGTTCATGGTACGGCTCGTGGGGAGTGTGTTTCACCTATGCGACATG 1876
||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1797 ACAACTTCCTGATGGTTCATGGTATGGCTCGTGGGGAGTGTGTTTCACCTATGCAACATG 1856
Query 1877 GTTTGGTATTAAAGGGATGTTAGCTGCTGGCAAAACATATGAGACCAGTCTTTGTATTAG 1936
||||||||||||||| ||||| ||| | |||||||||||||||| |||||||||||||||
Sbjct 1857 GTTTGGTATTAAAGGCATGTTGGCTTCAGGCAAAACATATGAGAGCAGTCTTTGTATTAG 1916
Query 1937 AAAAGCTTGTGGTTTCTTGCTCTCCAAACAACTTTGTTGTGGTGGGTGGGGAGAGAGCTA 1996
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1917 AAAAGCTTGTGGTTTCTTGCTCTCCAAACAACTTTGTTGTGGTGGATGGGGAGAGAGCTA 1976
Query 1997 CCTTTCTTGCCAAAACAAAGTATACACCAATCTTCCAGGGAACAAATCGCATATCGTGAA 2056
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 1977 CCTTTCTTGCCAAAACAAAGTATACACCAATCTTCCTGGGAATAAATCGCATATTGTGAA 2036
Query 2057 CACATCATGGGCAGTTTTGGCTCTCATTGAAGCAGGACAAGCTAATAGAGA-CCTGATGC 2115
||||||||||||| | ||||||||||||||||| |||||||||| |||||| || |||||
Sbjct 2037 CACATCATGGGCACTCTTGGCTCTCATTGAAGCGGGACAAGCTAGTAGAGATCC-GATGC 2095
Query 2116 CATTGCATCGCGGGGCAAAATCGCTGATCAACTCGCAGATGGAAGACGGAGATTACCCTC 2175
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 2096 CATTGCATCGCGGGGCAAAATCGCTGATCAACTCGCAGATGGAAGATGGAGATTACCCAC 2155
Query 2176 AACAGGAGATATTGGGAGTCTTTAATCGGAATTGTATGATCAGCTACTCAGCTTATAGAA 2235
|||| |||||| | ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2156 AACAAGAGATACTAGGAGTCTTTAATCGGAATTGTATGATCAGTTACTCAGCTTATAGAA 2215
Query 2236 ACATATTCCCTATTTGGGCTCTAGGAGAGTACCACAAACTCATGTTGTCTT 2286
|||||||||| ||||||||||| ||||| |||| |||||||||||||||||
Sbjct 2216 ACATATTCCCCATTTGGGCTCTTGGAGAATACCGCAAACTCATGTTGTCTT 2266
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115109849685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5