BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937175

Length=586
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G45150.1 | Symbols: TCP16 | TCP domain protein 16 | chr3:165...   326    2e-88


> AT3G45150.1 | Symbols: TCP16 | TCP domain protein 16 | chr3:16531179-16531676 
FORWARD LENGTH=498
Length=498

 Score =  326 bits (176),  Expect = 2e-88
 Identities = 339/413 (82%), Gaps = 29/413 (7%)
 Strand=Plus/Plus

Query  21   ATGGATTCGAGAAATAAAATTAACAACAGGCAAAAGGCAACAAGGACTCCAAGAGACCGC  80
            |||||||||| ||||  |||||||||||| |||||||||| ||||||||||| |||||||
Sbjct  1    ATGGATTCGAAAAATGGAATTAACAACAGCCAAAAGGCAAGAAGGACTCCAAAAGACCGC  60

Query  81   CATGTGAAAATTGGTGGCCGTGATCGTCGCATTCGGATCCCGCCGAGTATTGCTCCCCAA  140
            ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  61   CATTTGAAAATTGGTGGCCGTGATCGTCGCATTCGGATCCCGCCGAGTGTTGCTCCCCAA  120

Query  141  GTATTTAAATTGACTAAAGAACTCGGCTTCAAAACCGATGGTGAAACAGTCGGTTGGCTC  200
             |||||| |||||| |||||||||||||| ||||||||||||||||| ||| ||||||||
Sbjct  121  CTATTTAGATTGACAAAAGAACTCGGCTTTAAAACCGATGGTGAAACTGTCAGTTGGCTC  180

Query  201  CTCCAAAATGCCGAGCCCGCCATTTTCGCCGCCACCGGCCACGGCGTCAACACCACCCCC  260
            ||||| ||||||||||| ||||||||||| ||||| || || || |||| ||||||| ||
Sbjct  181  CTCCAGAATGCCGAGCCTGCCATTTTCGCAGCCACGGGACATGGTGTCACCACCACCTCC  240

Query  261  AGTGATG-TCACCCATGTTCATAATCATACGAACCGTGGTTATAACC-ACTT-CACCATT  317
            | ||| | | | ||| |  || ||| |   |||   |  || |  || | || |||| ||
Sbjct  241  AATGAAGAT-ATCCA-GC-CA-AAT-AG--GAA---T--TT-T--CCTAGTTACACCTTT  285

Query  318  AATATTGGTGATC--A-TAATAACGTTTTCTCTTATACAGGC-GCAAATATTGGTCATCA  373
            |||  || | ||   | ||||||||||||| ||| ||| ||  | ||||| |||||||| 
Sbjct  286  AATGGTGATAATATTAGTAATAACGTTTTCCCTTGTAC-GGTTGTAAATACTGGTCATCG  344

Query  374  TGAGATGGTCTTTCCGGGTGT-TACAATGACAGAAT-ATGC-CGCTTCATCTA  423
            | ||||||| ||||||| | | |||||||||||| | |||| | ||||| |||
Sbjct  345  TCAGATGGTGTTTCCGGTT-TCTACAATGACAGA-TCATGCAC-CTTCAACTA  394



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28181356467


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5