BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg937176 Length=1064 Score E Sequences producing significant alignments: (Bits) Value AT3G56890.1 | Symbols: | F-box associated ubiquitination effec... 291 1e-77 AT2G15640.1 | Symbols: | F-box family protein | chr2:6816792-6... 108 1e-22 AT1G31090.1 | Symbols: | F-box family protein | chr1:11094407-... 102 6e-21 AT2G16450.1 | Symbols: | F-box and associated interaction doma... 78.7 1e-13 > AT3G56890.1 | Symbols: | F-box associated ubiquitination effector family protein | chr3:21062990-21063717 REVERSE LENGTH=660 Length=660 Score = 291 bits (157), Expect = 1e-77 Identities = 331/414 (80%), Gaps = 15/414 (4%) Strand=Plus/Plus Query 537 TTTGGTTAACTATAAGGGTAAATTAGGTGCGATTGATTGGAAGTATGTTGCTAACGATGC 596 |||||| ||||||| ||||||||||| || || | | || || ||||||| ||| || Sbjct 189 TTTGGTCAACTATATGGGTAAATTAGCTGTGACTAAGTGCAACTATGTTG---ACGTTGG 245 Query 597 TGATGAACGGCGTAT-CATTGAGTTGCGCTTGTGTGTTCTAGAGGATGTCGAGAAAAATG 655 || ||| | ||| | | |||||||| | ||||| |||||||||||||| |||||| | | Sbjct 246 TG--GAA-GACGT-TCCGTTGAGTTGTGTTTGTGGGTTCTAGAGGATGTTGAGAAACAGG 301 Query 656 AATGGTTGAAACATGTGTACACCTTGCCGGAGAATGAAGTCTTTGATTCATGCGATGATT 715 ||||| | || |||| ||||| || ||||||||||||||| ||| ||| ||||| | | Sbjct 302 AATGGGTCAAGTATGTCTACACTTTACCGGAGAATGAAGTCCTTGGTTCCTGCGA-G--T 358 Query 716 TTTCAGTTGCTGGAGTAACTAG-TTCAGGTGATATCGTTTTGTCCATGAAGCATGTGTGT 774 |||||||||||||||| ||| | ||| ||||| ||||||| |||||| || ||| Sbjct 359 TTTCAGTTGCTGGAGTGACT-GCAAGAGGCGATATTGTTTTGTGTATGAAGTATACATGT 417 Query 775 AAACCTTTTTATGTGTTCTACTTCAATCCCGAAAGGAACACTCTACAAAGTGTTGAAATC 834 ||||| | ||||| ||||||||| ||||||||| ||| || || ||||||||||||||| Sbjct 418 AAACCGTACTATGTATTCTACTTCGATCCCGAAAAGAAAACCCTCCAAAGTGTTGAAATC 477 Query 835 CAAGGTTTTGGAGCTAACCTTGAAGCCCCTGAGAATCATGGT-ACAGTGTATGCCTTTGT 893 ||||||||||||||||| ||||||| |||| ||| |||| | ||| ||||||||||| Sbjct 478 CAAGGTTTTGGAGCTAAGCTTGAAGAGGTTGAGCATCGTGGTGA-AGTTTATGCCTTTGT 536 Query 894 CGACCATGTAGAGGATCTCAGTGTTTGTGATGCAAAGCAACTCAAGTCAAGCAT 947 ||| |||| |||||||| ||| | |||||||||||| ||||||||||||| Sbjct 537 TGACTATGTTGAGGATCTTAGTCTAAACGATGCAAAGCAATTCAAGTCAAGCAT 590 > AT2G15640.1 | Symbols: | F-box family protein | chr2:6816792-6818205 REVERSE LENGTH=1414 Length=1414 Score = 108 bits (58), Expect = 1e-22 Identities = 66/70 (94%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 776 AACCTTTTTATGTGTTCTACTTCAATCCCGAAAGGAACACTCTACAAAGTGTTGAAATCC 835 |||| |||||||| ||||||||||||||||||||||||||||| ||| |||||||||||| Sbjct 1212 AACCGTTTTATGTTTTCTACTTCAATCCCGAAAGGAACACTCTCCAACGTGTTGAAATCC 1271 Query 836 AAGGTTTTGG 845 |||||||||| Sbjct 1272 AAGGTTTTGG 1281 > AT1G31090.1 | Symbols: | F-box family protein | chr1:11094407-11095649 FORWARD LENGTH=936 Length=936 Score = 102 bits (55), Expect = 6e-21 Identities = 104/128 (81%), Gaps = 2/128 (2%) Strand=Plus/Plus Query 721 GTTGCTGGAGTAACTAG-TTCAGGTGATATCGTTTTGTCCATGAAGCATGTGTGTAAACC 779 |||| ||| | |||| | ||||||| | || |||||| | | ||| | | | |||||| Sbjct 634 GTTGTTGGGGCAACT-GCTTCAGGTCAAATTGTTTTGGCGAGGAATAAGGCATATAAACC 692 Query 780 TTTTTATGTGTTCTACTTCAATCCCGAAAGGAACACTCTACAAAGTGTTGAAATCCAAGG 839 ||||||||||| ||||| |||||||||| || ||||||||||||||||||||||||||| Sbjct 693 GTTTTATGTGTTTTACTTTAATCCCGAAAAGAGCACTCTACAAAGTGTTGAAATCCAAGG 752 Query 840 TTTTGGAG 847 | || ||| Sbjct 753 TGTTAGAG 760 > AT2G16450.1 | Symbols: | F-box and associated interaction domains-containing protein | chr2:7131520-7132803 REVERSE LENGTH=1284 Length=1284 Score = 78.7 bits (42), Expect = 1e-13 Identities = 46/48 (96%), Gaps = 0/48 (0%) Strand=Plus/Plus Query 288 GAGTGAAGGGATATGTATCAATGGGGTTTTGTATTACTTAGCTGACAC 335 |||||||||| |||||||||||||||||||||||||||||| |||||| Sbjct 630 GAGTGAAGGGGTATGTATCAATGGGGTTTTGTATTACTTAGGTGACAC 677 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52108165710 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5