BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937176

Length=1064
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G56890.1 | Symbols:  | F-box associated ubiquitination effec...   291    1e-77
  AT2G15640.1 | Symbols:  | F-box family protein | chr2:6816792-6...   108    1e-22
  AT1G31090.1 | Symbols:  | F-box family protein | chr1:11094407-...   102    6e-21
  AT2G16450.1 | Symbols:  | F-box and associated interaction doma...  78.7    1e-13


> AT3G56890.1 | Symbols:  | F-box associated ubiquitination effector 
family protein | chr3:21062990-21063717 REVERSE LENGTH=660
Length=660

 Score =  291 bits (157),  Expect = 1e-77
 Identities = 331/414 (80%), Gaps = 15/414 (4%)
 Strand=Plus/Plus

Query  537  TTTGGTTAACTATAAGGGTAAATTAGGTGCGATTGATTGGAAGTATGTTGCTAACGATGC  596
            |||||| ||||||| ||||||||||| || || | | || || |||||||   ||| || 
Sbjct  189  TTTGGTCAACTATATGGGTAAATTAGCTGTGACTAAGTGCAACTATGTTG---ACGTTGG  245

Query  597  TGATGAACGGCGTAT-CATTGAGTTGCGCTTGTGTGTTCTAGAGGATGTCGAGAAAAATG  655
            ||  ||| | ||| | | |||||||| | ||||| |||||||||||||| |||||| | |
Sbjct  246  TG--GAA-GACGT-TCCGTTGAGTTGTGTTTGTGGGTTCTAGAGGATGTTGAGAAACAGG  301

Query  656  AATGGTTGAAACATGTGTACACCTTGCCGGAGAATGAAGTCTTTGATTCATGCGATGATT  715
            ||||| | ||  |||| ||||| || ||||||||||||||| ||| ||| ||||| |  |
Sbjct  302  AATGGGTCAAGTATGTCTACACTTTACCGGAGAATGAAGTCCTTGGTTCCTGCGA-G--T  358

Query  716  TTTCAGTTGCTGGAGTAACTAG-TTCAGGTGATATCGTTTTGTCCATGAAGCATGTGTGT  774
            |||||||||||||||| ||| |    ||| ||||| |||||||  |||||| ||   |||
Sbjct  359  TTTCAGTTGCTGGAGTGACT-GCAAGAGGCGATATTGTTTTGTGTATGAAGTATACATGT  417

Query  775  AAACCTTTTTATGTGTTCTACTTCAATCCCGAAAGGAACACTCTACAAAGTGTTGAAATC  834
            ||||| |  ||||| ||||||||| ||||||||| ||| || || |||||||||||||||
Sbjct  418  AAACCGTACTATGTATTCTACTTCGATCCCGAAAAGAAAACCCTCCAAAGTGTTGAAATC  477

Query  835  CAAGGTTTTGGAGCTAACCTTGAAGCCCCTGAGAATCATGGT-ACAGTGTATGCCTTTGT  893
            ||||||||||||||||| |||||||    |||| ||| |||| | ||| |||||||||||
Sbjct  478  CAAGGTTTTGGAGCTAAGCTTGAAGAGGTTGAGCATCGTGGTGA-AGTTTATGCCTTTGT  536

Query  894  CGACCATGTAGAGGATCTCAGTGTTTGTGATGCAAAGCAACTCAAGTCAAGCAT  947
             ||| |||| |||||||| ||| |    |||||||||||| |||||||||||||
Sbjct  537  TGACTATGTTGAGGATCTTAGTCTAAACGATGCAAAGCAATTCAAGTCAAGCAT  590


> AT2G15640.1 | Symbols:  | F-box family protein | chr2:6816792-6818205 
REVERSE LENGTH=1414
Length=1414

 Score =  108 bits (58),  Expect = 1e-22
 Identities = 66/70 (94%), Gaps = 0/70 (0%)
 Strand=Plus/Plus

Query  776   AACCTTTTTATGTGTTCTACTTCAATCCCGAAAGGAACACTCTACAAAGTGTTGAAATCC  835
             |||| |||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct  1212  AACCGTTTTATGTTTTCTACTTCAATCCCGAAAGGAACACTCTCCAACGTGTTGAAATCC  1271

Query  836   AAGGTTTTGG  845
             ||||||||||
Sbjct  1272  AAGGTTTTGG  1281


> AT1G31090.1 | Symbols:  | F-box family protein | chr1:11094407-11095649 
FORWARD LENGTH=936
Length=936

 Score =  102 bits (55),  Expect = 6e-21
 Identities = 104/128 (81%), Gaps = 2/128 (2%)
 Strand=Plus/Plus

Query  721  GTTGCTGGAGTAACTAG-TTCAGGTGATATCGTTTTGTCCATGAAGCATGTGTGTAAACC  779
            |||| ||| | |||| | ||||||| | || |||||| | | |||  | |  | ||||||
Sbjct  634  GTTGTTGGGGCAACT-GCTTCAGGTCAAATTGTTTTGGCGAGGAATAAGGCATATAAACC  692

Query  780  TTTTTATGTGTTCTACTTCAATCCCGAAAGGAACACTCTACAAAGTGTTGAAATCCAAGG  839
             ||||||||||| ||||| |||||||||| || |||||||||||||||||||||||||||
Sbjct  693  GTTTTATGTGTTTTACTTTAATCCCGAAAAGAGCACTCTACAAAGTGTTGAAATCCAAGG  752

Query  840  TTTTGGAG  847
            | || |||
Sbjct  753  TGTTAGAG  760


> AT2G16450.1 | Symbols:  | F-box and associated interaction domains-containing 
protein | chr2:7131520-7132803 REVERSE LENGTH=1284
Length=1284

 Score = 78.7 bits (42),  Expect = 1e-13
 Identities = 46/48 (96%), Gaps = 0/48 (0%)
 Strand=Plus/Plus

Query  288  GAGTGAAGGGATATGTATCAATGGGGTTTTGTATTACTTAGCTGACAC  335
            |||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct  630  GAGTGAAGGGGTATGTATCAATGGGGTTTTGTATTACTTAGGTGACAC  677



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 52108165710


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5