BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937177

Length=320
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G45160.1 | Symbols:  | Putative membrane lipoprotein | chr3:...   398    2e-110


> AT3G45160.1 | Symbols:  | Putative membrane lipoprotein | chr3:16533451-16534082 
REVERSE LENGTH=549
Length=549

 Score =  398 bits (215),  Expect = 2e-110
 Identities = 287/321 (89%), Gaps = 8/321 (2%)
 Strand=Plus/Plus

Query  1    AGCTCATAACATAGAACCGAGATGGGAATAAAAC-CTAAGTATATTGTGGTTGTTATCAT  59
            ||||||| | ||| |||| | ||||| || |||| ||||| || ||||||||||||| ||
Sbjct  51   AGCTCAT-A-ATAAAACCAATATGGGGAT-AAACTCTAAGCATGTTGTGGTTGTTATTAT  107

Query  60   GGCGATGATGATCATAATAAGCTCATGTTTGGCTGCGAGGAATATGATTCCCCGGGAAAA  119
            || ||||||| |||| |||||||||||||||||||| |||||||| ||||||||||||| 
Sbjct  108  GGTGATGATGGTCATTATAAGCTCATGTTTGGCTGCAAGGAATATAATTCCCCGGGAAAC  167

Query  120  TAATCAACAAAGCGAAAAAATATCTCGAGAGATGATCATAGGGAAAGAAGAAGATTCTAC  179
            ||||||| ||||||||||| | || ||||||||||||||||||||||||||||| |||||
Sbjct  168  TAATCAAGAAAGCGAAAAAGTGTCCCGAGAGATGATCATAGGGAAAGAAGAAGACTCTAC  227

Query  180  TGAGAAAATAGAGCACCCAAGAAGCAGCGTGGAGAATCACCATTACATCCCAAGACAAGA  239
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  228  TGAGAAAATAGAGCACCCAAGAAGCAGCGTGGAGAATCACCATTATATCCCAAGACAAGA  287

Query  240  TTTCAACTACTATGTACCTGGAGGCGATAACAATGGAggtggtggtggtggtggtggATA  299
            |||| || |||||| |||||||||||| || |||||||| ||||||||||||||   |||
Sbjct  288  TTTCTACAACTATGGACCTGGAGGCGAAAATAATGGAGGAGGTGGTGGTGGTGG---ATA  344

Query  300  ACTCAAAACAAATCG-GAAAA  319
            |||||||| |||||| |||||
Sbjct  345  ACTCAAAAGAAATCGCGAAAA  365



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14879253704


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5