BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg937179 Length=266 Score E Sequences producing significant alignments: (Bits) Value AT3G45180.1 | Symbols: | Ubiquitin-like superfamily protein | ... 311 2e-84 > AT3G45180.1 | Symbols: | Ubiquitin-like superfamily protein | chr3:16538991-16539212 REVERSE LENGTH=222 Length=222 Score = 311 bits (168), Expect = 2e-84 Identities = 205/223 (92%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 21 ATGATAGAGGTGGTGCTTAACGATCGGCTAGAGAA-AACAGTTAGGGTGAAGTGCAACGA 79 |||||||||||||||||||| |||||||| | ||| || || || |||||||||||||| Sbjct 1 ATGATAGAGGTGGTGCTTAATGATCGGCTTGGGAAGAA-GGTGAGAGTGAAGTGCAACGA 59 Query 80 GGACGACACCATTGGAGATCTCAAGAAGCTTGTGGCAGCCCAAACTGGAACCCGACCCGA 139 ||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 60 GGAAGACACCATCGGAGATCTCAAGAAGCTTGTGGCGGCCCAAACTGGAACCCGACCCGA 119 Query 140 TAAGATTCGGATCCAAAAATGGTACAACATCTACAAGGATCATATCACTCTAAACGATTA 199 ||||||||||||||||||||||||||||||||||||||||||||| |||| || || || Sbjct 120 AAAGATTCGGATCCAAAAATGGTACAACATCTACAAGGATCATATCCCTCTCAAGGACTA 179 Query 200 TGAAATCCATGATGGCATGGGTCTCGAGCTCTACTACAACTAA 242 ||||||||||| |||||||||||||||||||||||||||||| Sbjct 180 CGAAATCCATGACGGCATGGGTCTCGAGCTCTACTACAACTAA 222 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 12164795258 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5