BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937179
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
AT3G45180.1 | Symbols: | Ubiquitin-like superfamily protein | ... 311 2e-84
> AT3G45180.1 | Symbols: | Ubiquitin-like superfamily protein
| chr3:16538991-16539212 REVERSE LENGTH=222
Length=222
Score = 311 bits (168), Expect = 2e-84
Identities = 205/223 (92%), Gaps = 2/223 (1%)
Strand=Plus/Plus
Query 21 ATGATAGAGGTGGTGCTTAACGATCGGCTAGAGAA-AACAGTTAGGGTGAAGTGCAACGA 79
|||||||||||||||||||| |||||||| | ||| || || || ||||||||||||||
Sbjct 1 ATGATAGAGGTGGTGCTTAATGATCGGCTTGGGAAGAA-GGTGAGAGTGAAGTGCAACGA 59
Query 80 GGACGACACCATTGGAGATCTCAAGAAGCTTGTGGCAGCCCAAACTGGAACCCGACCCGA 139
||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 60 GGAAGACACCATCGGAGATCTCAAGAAGCTTGTGGCGGCCCAAACTGGAACCCGACCCGA 119
Query 140 TAAGATTCGGATCCAAAAATGGTACAACATCTACAAGGATCATATCACTCTAAACGATTA 199
||||||||||||||||||||||||||||||||||||||||||||| |||| || || ||
Sbjct 120 AAAGATTCGGATCCAAAAATGGTACAACATCTACAAGGATCATATCCCTCTCAAGGACTA 179
Query 200 TGAAATCCATGATGGCATGGGTCTCGAGCTCTACTACAACTAA 242
||||||||||| ||||||||||||||||||||||||||||||
Sbjct 180 CGAAATCCATGACGGCATGGGTCTCGAGCTCTACTACAACTAA 222
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12164795258
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5