BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937181
Length=935
Score E
Sequences producing significant alignments: (Bits) Value
AT3G45200.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1260 0.0
AT1G64870.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 438 4e-122
> AT3G45200.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G64870.1);
Has 95 Blast hits to 91 proteins in 10 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 95; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:16548828-16549730
REVERSE LENGTH=903
Length=903
Score = 1260 bits (682), Expect = 0.0
Identities = 834/906 (92%), Gaps = 15/906 (2%)
Strand=Plus/Plus
Query 22 ATGTCTCGTCTCAACGCACAAGAACTACATGTTTTCCATGCTCAAGATAGAGATATATTC 81
||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1 ATGTCTCTTCTCAACGCACAAGAACTACATGTTTTCCATGCTCAAGACAGAGAGATATTC 60
Query 82 TCTAAATTGGTCCTCAAATTCTTAAGACCTCCGGCTGAGTCACTTCTTGTCATGGCCACA 141
|||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||
Sbjct 61 TCTAAATTGGTCCTCAAATTCTCAAGGCCTCCAGCTGAGTCACTTCTTGTCATGGCCACA 120
Query 142 TGGCTTTGGCTTGAGGACTTTGGCTTTGAAAACATTTTCTCAATCATCCTCACTCTCCCA 201
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 121 TGGCTTTGGCTCGAGGACTTTGGCTTTGAAAACATTTTCTCAATCATCCTCACTCTCACA 180
Query 202 GATCCACTCATTGTGGGTCTTGCTAACGAGGCTGTCTCATGCTTTCGGTGCCTTTATTTC 261
||||||||||||| ||||||||| |||| |||||||||||||||| |||||||| |||
Sbjct 181 GATCCACTCATTGCCGGTCTTGCTTACGAAGCTGTCTCATGCTTTCAGTGCCTTTCTTTA 240
Query 262 AGCAATCCCCCAATTGGCCGAATCCCTCTCACCGCAAAATA-CATGAAAAAGAATATATC 320
| ||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||
Sbjct 241 AACAATCCCCCAATTGGCCGAATCCCTCTCACCACAAAATATC-TGAAAAAGAATATATC 299
Query 321 ACTCCAAACAATCTACAAAAATCGCTATAGTGCTATCACAGGAATCAAGAACTTCTTAAC 380
|||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 300 ACTCCAAATGATCTACAAAAATCGATATAGTGCTATCACAGGAATCAAAAACTTCTTAAC 359
Query 381 CACTGTTTGTTCCAGAATCTTTACCGACATCCTTTTACGAGTTCTTCCATCTTCTTCAAT 440
|||||||||| |||||||||| |||||||||||| |||||||||||||| ||||||||||
Sbjct 360 CACTGTTTGTACCAGAATCTTCACCGACATCCTTCTACGAGTTCTTCCACCTTCTTCAAT 419
Query 441 GCCTTCCTTTGACACAAGACTTCGCCAACCTCGT-AGAATCCCCGGTTTCCCTCATCCGA 499
| ||||||||||| |||||||||||||||||| | | ||||||||| |||||||||||||
Sbjct 420 GTCTTCCTTTGACGCAAGACTTCGCCAACCTCTTCA-AATCCCCGGGTTCCCTCATCCGA 478
Query 500 TTTTCGGAAGCATCAACGTGATGCCTATTGAAGTTGATAGAGATAATTTCTCCAACAA-- 557
|||| ||||||||||| |||||||||| |||||||||||| |||||||||||||||||
Sbjct 479 TTTTTGGAAGCATCAATGTGATGCCTAATGAAGTTGATAGGGATAATTTCTCCAACAAGA 538
Query 558 -C------TTATTTTTCATCCCACATGGTCTATGGGGCTGGAACGCTAATTGCATCGCCA 610
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 539 ACAACAACTTATTTTTCATCCCAAATGGTCTATGGGGCTGGAACGCTAATTGCATCGCCA 598
Query 611 CTGAGAATGATCGGTCCTTGTTTTTAACATTTTCTCGTGGTTATCCAGTGACTCATGCAG 670
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 599 CTGAGAACGATCGGACCTTGTTTTTAACATTTTCTCGTGGTTATCCAGTGACTCATGCTG 658
Query 671 AGATATTTGAGCTCTTTACCAAGGAATATGGAGAAAATTGTGTTGAGGGAGTTTACATGC 730
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 659 AGATAATTGAGCTCTTTACCAAGGAGTATGGAGAAAATTGTGTTGAGGGAGTTTACATGC 718
Query 731 AGCATGACAACAAAAAATCTCCCAATGCAAACGCGAATAGGAGCTGCGGGCAACAATCAT 790
| ||||||||||||| |||| |||||||||||| ||||||||||||| ||||||||||
Sbjct 719 AACATGACAACAAAAGATCTTTCAATGCAAACGCAAATAGGAGCTGCGAGCAACAATCAC 778
Query 791 TATTCGCGAGGCTTGTCATGGACTCGGTTGCTACCGTGGACCGCGTACTCGACGGCGATC 850
|||| |||||||||||| ||||||||||| |||||||||||||||||||||| | ||| |
Sbjct 779 TATTTGCGAGGCTTGTCTTGGACTCGGTTACTACCGTGGACCGCGTACTCGATGACGAGC 838
Query 851 AGAGAAAAGAGCTTGA-GATAAACGGAAAGAACATTTGGGCTCGTAAGTACGAGAAGAGG 909
||| |||||||||| | ||| |||||||||||||||||||||||||||| || ||||||
Sbjct 839 AGAAAAAAGAGCTT-ATGATTTACGGAAAGAACATTTGGGCTCGTAAGTATGATAAGAGG 897
Query 910 GAGTGA 915
||||||
Sbjct 898 GAGTGA 903
> AT1G64870.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G45200.1);
Has 99 Blast hits to 91 proteins in 10 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 99; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:24102917-24103831
FORWARD LENGTH=915
Length=915
Score = 438 bits (237), Expect = 4e-122
Identities = 704/921 (76%), Gaps = 65/921 (7%)
Strand=Plus/Plus
Query 22 ATGTCTCGTCTCAACGCACAAGAACTACATGTTTTCCATGCTCAAGATAGAGATATATTC 81
||||| | || || || | || ||||||||| ||||||||| ||||| ||||| ||||||
Sbjct 1 ATGTCACATCCCACCGTAGAACAACTACATGCTTTCCATGCACAAGAAAGAGAGATATTC 60
Query 82 TCTAAATTGGTCCTCAAATTCTTAAGACCTCCGGCTGAGTCACTTCTTGTCATGGCCACA 141
|||||| | || | ||| || |||||| || |||||||||||||||||||||||||||
Sbjct 61 TCTAAACTAGTTCAAAAACTCCGAAGACCACCAGCTGAGTCACTTCTTGTCATGGCCACA 120
Query 142 TGGCTTTGGCTTGAGGACTTTGGCTTTGAAAACATTTTCTCAATCATC-CTCACTCTCCC 200
||||||||| |||| ||||||||||| | |||||||||||| |||||| | | | |
Sbjct 121 TGGCTTTGGTTTGAAGACTTTGGCTTCGGAAACATTTTCTCCATCATCACGGTTTTTAGC 180
Query 201 AGATCCACTCATTGTGGGTCTTGCTAACGAGGCTGTCTCATGCTTTCGGTGCCTTTATT- 259
|||| ||||||||| | ||| |||||||||||||||| ||||||||||||||| | |
Sbjct 181 -GATCTACTCATTGTAGATCTCGCTAACGAGGCTGTCTTGTGCTTTCGGTGCCTTGAATC 239
Query 260 TCAGCAATCCCCCAATTG--GCC-G--A-ATCCCTCTCACCGCAAA-ATACATGAAAAA- 311
| | || ||||||| || | | | | ||||||||||||| | | || |||||||||
Sbjct 240 TGACCAG-CCCCCAAATGATGTCAGTCAGATCCCTCTCACCG-AGAGATTCATGAAAAAT 297
Query 312 GAATATATCACTCCAAACAATCTACAAAAATCGCTATAGTGCTATCACAGGAATCAAGAA 371
|| ||||| || |||| |||| |||| |||| || | ||| || || ||||| |||||
Sbjct 298 GAC-ATATCCCTTCAAATAATCCACAATCATCGATACACTGCCATTACGGGAATAAAGAA 356
Query 372 CTTCTTAACCACTGTTTGTTCCAGAATCTT-TACCGACATCCTTTTACGAGTTCTTCCAT 430
||| ||||||||| ||||||| ||||| || | | || |||||| ||||||||||||||
Sbjct 357 CTTTTTAACCACTATTTGTTCTAGAATATTCT-CTGATATCCTTCAACGAGTTCTTCCAT 415
Query 431 CTTCTTCAATGCCTTCCTTTGA-CAC-AAGACTTCGCCAACCTCGT-AGAATCCCCGGTT 487
|||| ||| | ||| | || | ||| || || ||||| |||| | | || |||||||
Sbjct 416 CTTCATCA-T-CCT-CATTC-ATCACCAAT-CTCCGCCACCCTC-TCATCATTCCCGGTT 469
Query 488 TCCCTCATCCGA-TTTTCGGAAGCATCAACGTGAT-GCCTATTGAA-GTTGATAGAGATA 544
|||||||||| | |||| ||| |||||||||| || ||||| | | |||| ||| ||||
Sbjct 470 TCCCTCATCCAACTTTTGGGA-GCATCAACGT-ATTGCCTAAT-ATCGTTGCTAGGGATA 526
Query 545 ATTTCTCCAA-C--AACTT-ATTT-TTCATCCCACATGGTCTATGGGGCTGGAACGCTAA 599
|| | ||||| | || || |||| || ||| |||||||| |||||||||||||||||
Sbjct 527 ATCT-TCCAAACGCAAATTCATTTCTTTTTCCT-CATGGTCTTTGGGGCTGGAACGCTAA 584
Query 600 TTGCAT--CGCCACTGAGAATGATCGGTCCTTGTTTTTAACATTTTCTCGTGGTTATCCA 657
||| ||| ||||| || || ||| | | ||| |||| ||||||||||||| |||
Sbjct 585 C--CATGTCGCGACTGATAAAGAACGGACGGTATTTCTAACGTTTTCTCGTGGTTTTCCC 642
Query 658 GTGACTCATGCAGAGAT-ATTTGAGCTCTTTACCAAGGA-ATATGGAGAAAATTGTGTTG 715
||| | ||||| ||| | ||| | ||||| ||| || | |||||||||| ||||||| |
Sbjct 643 GTGTCACATGCTGAGGTGATTC-ATCTCTTCACCGAG-ATATATGGAGAAGATTGTGTCG 700
Query 716 AGGGAGTTTACATGC-AGCATGACAACAAAAAATC-TCCCAATG-CAAACGCGAATAGGA 772
| | |||||||||| || | ||| ||| || ||| |||| ||| | | ||| | |
Sbjct 701 AAAGCGTTTACATGCCAG-AGGACGGTGGAAATTCCTCC-AATGACAA-CACAAATTGCA 757
Query 773 --G--C-TGCGGGCAACAATCATTATTCGCGAGGCTTGTCATGGACTCGGTTGCTACCGT 827
| | | | | |||||| || ||||||||| | | ||| |||||||||||| ||||||
Sbjct 758 ATGGTCAT-CAG-CAACAACCACTATTCGCGAAGATGGTCTTGGACTCGGTTGTTACCGT 815
Query 828 GGACCGCGTACTC-GACGGCGATCAGAGA-AAAGAGCT-TGAGATAAACGGAAAGAACAT 884
|| || ||||| | |||| | | | | ||| || | | |||| || |||||| | ||
Sbjct 816 AGATCGTATACTCAG-CGGCCAGGAAAAACAAA-AG-TATAAGATCAATGGAAAGCATAT 872
Query 885 TTGGGCTCGTAAGTACGAGAA 905
|||||||||||||| | ||||
Sbjct 873 TTGGGCTCGTAAGTTCAAGAA 893
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45713073770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5