BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg937181 Length=935 Score E Sequences producing significant alignments: (Bits) Value AT3G45200.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1260 0.0 AT1G64870.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 438 4e-122 > AT3G45200.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64870.1); Has 95 Blast hits to 91 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:16548828-16549730 REVERSE LENGTH=903 Length=903 Score = 1260 bits (682), Expect = 0.0 Identities = 834/906 (92%), Gaps = 15/906 (2%) Strand=Plus/Plus Query 22 ATGTCTCGTCTCAACGCACAAGAACTACATGTTTTCCATGCTCAAGATAGAGATATATTC 81 ||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 1 ATGTCTCTTCTCAACGCACAAGAACTACATGTTTTCCATGCTCAAGACAGAGAGATATTC 60 Query 82 TCTAAATTGGTCCTCAAATTCTTAAGACCTCCGGCTGAGTCACTTCTTGTCATGGCCACA 141 |||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||| Sbjct 61 TCTAAATTGGTCCTCAAATTCTCAAGGCCTCCAGCTGAGTCACTTCTTGTCATGGCCACA 120 Query 142 TGGCTTTGGCTTGAGGACTTTGGCTTTGAAAACATTTTCTCAATCATCCTCACTCTCCCA 201 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 121 TGGCTTTGGCTCGAGGACTTTGGCTTTGAAAACATTTTCTCAATCATCCTCACTCTCACA 180 Query 202 GATCCACTCATTGTGGGTCTTGCTAACGAGGCTGTCTCATGCTTTCGGTGCCTTTATTTC 261 ||||||||||||| ||||||||| |||| |||||||||||||||| |||||||| ||| Sbjct 181 GATCCACTCATTGCCGGTCTTGCTTACGAAGCTGTCTCATGCTTTCAGTGCCTTTCTTTA 240 Query 262 AGCAATCCCCCAATTGGCCGAATCCCTCTCACCGCAAAATA-CATGAAAAAGAATATATC 320 | ||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| Sbjct 241 AACAATCCCCCAATTGGCCGAATCCCTCTCACCACAAAATATC-TGAAAAAGAATATATC 299 Query 321 ACTCCAAACAATCTACAAAAATCGCTATAGTGCTATCACAGGAATCAAGAACTTCTTAAC 380 |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 300 ACTCCAAATGATCTACAAAAATCGATATAGTGCTATCACAGGAATCAAAAACTTCTTAAC 359 Query 381 CACTGTTTGTTCCAGAATCTTTACCGACATCCTTTTACGAGTTCTTCCATCTTCTTCAAT 440 |||||||||| |||||||||| |||||||||||| |||||||||||||| |||||||||| Sbjct 360 CACTGTTTGTACCAGAATCTTCACCGACATCCTTCTACGAGTTCTTCCACCTTCTTCAAT 419 Query 441 GCCTTCCTTTGACACAAGACTTCGCCAACCTCGT-AGAATCCCCGGTTTCCCTCATCCGA 499 | ||||||||||| |||||||||||||||||| | | ||||||||| ||||||||||||| Sbjct 420 GTCTTCCTTTGACGCAAGACTTCGCCAACCTCTTCA-AATCCCCGGGTTCCCTCATCCGA 478 Query 500 TTTTCGGAAGCATCAACGTGATGCCTATTGAAGTTGATAGAGATAATTTCTCCAACAA-- 557 |||| ||||||||||| |||||||||| |||||||||||| ||||||||||||||||| Sbjct 479 TTTTTGGAAGCATCAATGTGATGCCTAATGAAGTTGATAGGGATAATTTCTCCAACAAGA 538 Query 558 -C------TTATTTTTCATCCCACATGGTCTATGGGGCTGGAACGCTAATTGCATCGCCA 610 | ||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 539 ACAACAACTTATTTTTCATCCCAAATGGTCTATGGGGCTGGAACGCTAATTGCATCGCCA 598 Query 611 CTGAGAATGATCGGTCCTTGTTTTTAACATTTTCTCGTGGTTATCCAGTGACTCATGCAG 670 ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| | Sbjct 599 CTGAGAACGATCGGACCTTGTTTTTAACATTTTCTCGTGGTTATCCAGTGACTCATGCTG 658 Query 671 AGATATTTGAGCTCTTTACCAAGGAATATGGAGAAAATTGTGTTGAGGGAGTTTACATGC 730 ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 659 AGATAATTGAGCTCTTTACCAAGGAGTATGGAGAAAATTGTGTTGAGGGAGTTTACATGC 718 Query 731 AGCATGACAACAAAAAATCTCCCAATGCAAACGCGAATAGGAGCTGCGGGCAACAATCAT 790 | ||||||||||||| |||| |||||||||||| ||||||||||||| |||||||||| Sbjct 719 AACATGACAACAAAAGATCTTTCAATGCAAACGCAAATAGGAGCTGCGAGCAACAATCAC 778 Query 791 TATTCGCGAGGCTTGTCATGGACTCGGTTGCTACCGTGGACCGCGTACTCGACGGCGATC 850 |||| |||||||||||| ||||||||||| |||||||||||||||||||||| | ||| | Sbjct 779 TATTTGCGAGGCTTGTCTTGGACTCGGTTACTACCGTGGACCGCGTACTCGATGACGAGC 838 Query 851 AGAGAAAAGAGCTTGA-GATAAACGGAAAGAACATTTGGGCTCGTAAGTACGAGAAGAGG 909 ||| |||||||||| | ||| |||||||||||||||||||||||||||| || |||||| Sbjct 839 AGAAAAAAGAGCTT-ATGATTTACGGAAAGAACATTTGGGCTCGTAAGTATGATAAGAGG 897 Query 910 GAGTGA 915 |||||| Sbjct 898 GAGTGA 903 > AT1G64870.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G45200.1); Has 99 Blast hits to 91 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:24102917-24103831 FORWARD LENGTH=915 Length=915 Score = 438 bits (237), Expect = 4e-122 Identities = 704/921 (76%), Gaps = 65/921 (7%) Strand=Plus/Plus Query 22 ATGTCTCGTCTCAACGCACAAGAACTACATGTTTTCCATGCTCAAGATAGAGATATATTC 81 ||||| | || || || | || ||||||||| ||||||||| ||||| ||||| |||||| Sbjct 1 ATGTCACATCCCACCGTAGAACAACTACATGCTTTCCATGCACAAGAAAGAGAGATATTC 60 Query 82 TCTAAATTGGTCCTCAAATTCTTAAGACCTCCGGCTGAGTCACTTCTTGTCATGGCCACA 141 |||||| | || | ||| || |||||| || ||||||||||||||||||||||||||| Sbjct 61 TCTAAACTAGTTCAAAAACTCCGAAGACCACCAGCTGAGTCACTTCTTGTCATGGCCACA 120 Query 142 TGGCTTTGGCTTGAGGACTTTGGCTTTGAAAACATTTTCTCAATCATC-CTCACTCTCCC 200 ||||||||| |||| ||||||||||| | |||||||||||| |||||| | | | | Sbjct 121 TGGCTTTGGTTTGAAGACTTTGGCTTCGGAAACATTTTCTCCATCATCACGGTTTTTAGC 180 Query 201 AGATCCACTCATTGTGGGTCTTGCTAACGAGGCTGTCTCATGCTTTCGGTGCCTTTATT- 259 |||| ||||||||| | ||| |||||||||||||||| ||||||||||||||| | | Sbjct 181 -GATCTACTCATTGTAGATCTCGCTAACGAGGCTGTCTTGTGCTTTCGGTGCCTTGAATC 239 Query 260 TCAGCAATCCCCCAATTG--GCC-G--A-ATCCCTCTCACCGCAAA-ATACATGAAAAA- 311 | | || ||||||| || | | | | ||||||||||||| | | || ||||||||| Sbjct 240 TGACCAG-CCCCCAAATGATGTCAGTCAGATCCCTCTCACCG-AGAGATTCATGAAAAAT 297 Query 312 GAATATATCACTCCAAACAATCTACAAAAATCGCTATAGTGCTATCACAGGAATCAAGAA 371 || ||||| || |||| |||| |||| |||| || | ||| || || ||||| ||||| Sbjct 298 GAC-ATATCCCTTCAAATAATCCACAATCATCGATACACTGCCATTACGGGAATAAAGAA 356 Query 372 CTTCTTAACCACTGTTTGTTCCAGAATCTT-TACCGACATCCTTTTACGAGTTCTTCCAT 430 ||| ||||||||| ||||||| ||||| || | | || |||||| |||||||||||||| Sbjct 357 CTTTTTAACCACTATTTGTTCTAGAATATTCT-CTGATATCCTTCAACGAGTTCTTCCAT 415 Query 431 CTTCTTCAATGCCTTCCTTTGA-CAC-AAGACTTCGCCAACCTCGT-AGAATCCCCGGTT 487 |||| ||| | ||| | || | ||| || || ||||| |||| | | || ||||||| Sbjct 416 CTTCATCA-T-CCT-CATTC-ATCACCAAT-CTCCGCCACCCTC-TCATCATTCCCGGTT 469 Query 488 TCCCTCATCCGA-TTTTCGGAAGCATCAACGTGAT-GCCTATTGAA-GTTGATAGAGATA 544 |||||||||| | |||| ||| |||||||||| || ||||| | | |||| ||| |||| Sbjct 470 TCCCTCATCCAACTTTTGGGA-GCATCAACGT-ATTGCCTAAT-ATCGTTGCTAGGGATA 526 Query 545 ATTTCTCCAA-C--AACTT-ATTT-TTCATCCCACATGGTCTATGGGGCTGGAACGCTAA 599 || | ||||| | || || |||| || ||| |||||||| ||||||||||||||||| Sbjct 527 ATCT-TCCAAACGCAAATTCATTTCTTTTTCCT-CATGGTCTTTGGGGCTGGAACGCTAA 584 Query 600 TTGCAT--CGCCACTGAGAATGATCGGTCCTTGTTTTTAACATTTTCTCGTGGTTATCCA 657 ||| ||| ||||| || || ||| | | ||| |||| ||||||||||||| ||| Sbjct 585 C--CATGTCGCGACTGATAAAGAACGGACGGTATTTCTAACGTTTTCTCGTGGTTTTCCC 642 Query 658 GTGACTCATGCAGAGAT-ATTTGAGCTCTTTACCAAGGA-ATATGGAGAAAATTGTGTTG 715 ||| | ||||| ||| | ||| | ||||| ||| || | |||||||||| ||||||| | Sbjct 643 GTGTCACATGCTGAGGTGATTC-ATCTCTTCACCGAG-ATATATGGAGAAGATTGTGTCG 700 Query 716 AGGGAGTTTACATGC-AGCATGACAACAAAAAATC-TCCCAATG-CAAACGCGAATAGGA 772 | | |||||||||| || | ||| ||| || ||| |||| ||| | | ||| | | Sbjct 701 AAAGCGTTTACATGCCAG-AGGACGGTGGAAATTCCTCC-AATGACAA-CACAAATTGCA 757 Query 773 --G--C-TGCGGGCAACAATCATTATTCGCGAGGCTTGTCATGGACTCGGTTGCTACCGT 827 | | | | | |||||| || ||||||||| | | ||| |||||||||||| |||||| Sbjct 758 ATGGTCAT-CAG-CAACAACCACTATTCGCGAAGATGGTCTTGGACTCGGTTGTTACCGT 815 Query 828 GGACCGCGTACTC-GACGGCGATCAGAGA-AAAGAGCT-TGAGATAAACGGAAAGAACAT 884 || || ||||| | |||| | | | | ||| || | | |||| || |||||| | || Sbjct 816 AGATCGTATACTCAG-CGGCCAGGAAAAACAAA-AG-TATAAGATCAATGGAAAGCATAT 872 Query 885 TTGGGCTCGTAAGTACGAGAA 905 |||||||||||||| | |||| Sbjct 873 TTGGGCTCGTAAGTTCAAGAA 893 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45713073770 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5