BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937188
Length=1243
Score E
Sequences producing significant alignments: (Bits) Value
AT3G45242.1 | Symbols: CPuORF61 | conserved peptide upstream op... 1831 0.0
AT3G45240.1 | Symbols: GRIK1, ATSNAK2 | geminivirus rep interac... 1831 0.0
AT5G60548.1 | Symbols: CPuORF62 | conserved peptide upstream op... 1133 0.0
AT5G60550.1 | Symbols: GRIK2, ATSNAK1 | geminivirus rep interac... 1133 0.0
> AT3G45242.1 | Symbols: CPuORF61 | conserved peptide upstream
open reading frame 61 | chr3:16570478-16573762 REVERSE LENGTH=1945
Length=1945
Score = 1831 bits (991), Expect = 0.0
Identities = 1129/1196 (94%), Gaps = 8/1196 (1%)
Strand=Plus/Plus
Query 1 CATAATTTTTGGAGTAGATAATGTTTCGCGATAGTTTTTCATTTGTCCAAGCGATGAGTT 60
||||| |||||||||||||||||||| | ||||||||| |||||| ||||| ||||||||
Sbjct 439 CATAAATTTTGGAGTAGATAATGTTTTGTGATAGTTTTGCATTTGCCCAAGTGATGAGTT 498
Query 61 GCTTCGGTTGTTTTGGTGGCTCTGAGAGATCAAGACAGTCACCAAATCCATATGATGATG 120
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 499 GCTTCGGGTGTTTTGGTGGCTCTGAGAGATCAAGACATTCACCAAATCCATATGATGATG 558
Query 121 ATACATATTCCAATGATGGTGATGTAACCAGCAATGTGGGAGGAGATGATGAAG-A--AG 177
||||||||||| ||||| ||| || |||||||||| ||||||||||||||||| | ||
Sbjct 559 ATACATATTCCCATGATAGTGGTGAAACCAGCAATCCGGGAGGAGATGATGAAGAAGGAG 618
Query 178 -A-A-GAAGAGGAAGTAGAGGAGC-AGAGCCGTTCCAATCGATCTGAGGAAATTTTGAAA 233
| | ||||||||||||||||||| | || |||||||| |||||||| ||||||||||||
Sbjct 619 AAGAGGAAGAGGAAGTAGAGGAGCTA-AGTCGTTCCAAACGATCTGAAGAAATTTTGAAA 677
Query 234 TCTAAATTACAAAATGGACTAATCTGCAGGCAGTTTCCAGTGAAGGAAACTAATAAACTT 293
| |||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 678 TGTAAACTACAAAATGGACTAGTCTGCAGGCAGTTTCCAGTCAAGGAAACTAATAAACTT 737
Query 294 ATACGTGGAGAGGATGAAGATGGAAATAAGACAATAAATGAGTTTGTTCGTGAGCGTAAA 353
| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 738 ACACGCGGAGAGGATGAAGATGGAAACAAGACAATAAATGAGTTTGTTCGTGAGCGTAAA 797
Query 354 ATTGGATCTGGTAGTTATGGGAAAGTGGTTCTATATCGAAGCACTGTCGATGACAAGCAT 413
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 798 ATTGGATCTGGTAGTTATGGGAAAGTGGTTCTCTATCGAAGCACTGTCGATGACAAGCAT 857
Query 414 TATGCTATTAAGGCTTTTCACAAGTCATATTTATTAAAGCTACGGGTTGCACCTTCAGAA 473
||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||
Sbjct 858 TATGCTATTAAGGCTTTTCACAAGTCACATTTATCGAGGCTACGGGTTGCACCTTCAGAA 917
Query 474 ACTGCGATGGGGGATGTTCTTCGTGAGGTTATGATTATGAAAATCCTGGAGCATCCTAAT 533
||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 918 ACTGCTATGGGTGATGTTCTTCGTGAGGTTATGATTATGAAAACCCTGGAGCATCCTAAT 977
Query 534 ATCGTTAATCTCATTGAGGTGATAGATGACCCTGAGTTTGATGATTTTTACATGGTTCTC 593
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 978 ATCGTTAATCTCATTGAGGTGATTGATGACCCTGAGTTTGATGATTTTTACATGGTTCTC 1037
Query 594 GAATATGTTGATGGAAAATGGGCCTATGATGATTCTGGACCACCGGGTGCTCTCGGAGAA 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1038 GAATATGTTGATGGAAAATGGGCCTATGATGATTCTGGACCACCGGGTGCTCTCGGAGAA 1097
Query 654 ACTATTGCTAGAAAGTACTTGCGCGATGTAGTTACTGGCCTCATGTACCTCCATGCTCAT 713
| || |||||||||||||||||||||||||||| | |||||||||||||| |||||||||
Sbjct 1098 ATTACTGCTAGAAAGTACTTGCGCGATGTAGTTGCCGGCCTCATGTACCTTCATGCTCAT 1157
Query 714 AATGTAATTCATGGGGACATCAAACCGGACAATTTGCTGGTTACTAGTACCGGGAGAGTG 773
|||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1158 AATGTAATTCATGGTGACATCAAACCTGACAATTTACTGGTTACTAGTACCGGGAGAGTG 1217
Query 774 AAAATAGGAGATTTCAGTGTCAGCCAAGTGTTCAAGGATGATGATGATCAACTCCGTAGA 833
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1218 AAAATAGGAGATTTCAGTGTCAGCCAAGTATTCAAAGATGATGATGATCAACTCCGTAGA 1277
Query 834 TCTCCCGGCACTCCTGTCTTTACTGCCCCAGAATGTTGTTTAGGTATAACATACAGTGGA 893
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1278 TCACCCGGCACTCCTGTCTTTACTGCCCCAGAATGTTGTTTAGGTATAACATACAGTGGA 1337
Query 894 AGATCTGCAGACACGTGGGCAGTGGGAGTTACTTTGTATTGTATGATATTAGGACAATAC 953
||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1338 AGATCTGCAGATACGTGGGCAGTAGGAGTTACTTTGTATTGTATGATTTTAGGACAATAC 1397
Query 954 CCGTTTCTGGGTGATACACTTCAAGATACTTATGACAAGATTGTTCACAACCCGTTGATA 1013
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1398 CCATTTCTGGGTGATACACTTCAAGATACTTATGACAAGATTGTTCACAACCCGTTGATA 1457
Query 1014 ATCCCAGATGGACTGAATCCTCATCTCAGGGACTTGATCGAAGGTCTCCTTTGCAAAGAT 1073
|| || || ||||| ||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1458 ATACCGGAAGGACTCAATCCTCGTCTAAGGGACTTGATCGAAGGTCTCCTTTGCAAAGAT 1517
Query 1074 CCAAACCAGAGGATGACGTTGAAAGCTGTGGCGGAGCATCCATGGGTCACAGGAGAAGAC 1133
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1518 CCAAACCAGAGGATGACGTTGAAAGCTGTGGCGGAGCATCCATGGATCACAGGAGAAGAC 1577
Query 1134 GGGGCTATTTCAGAATATTTTTGTTGGTGCAAACGCAAAGCTGAAGAAGAGGAAGA 1189
||||||||||| ||||| | |||||||||||||||||||||||||||||| |||||
Sbjct 1578 GGGGCTATTTCGGAATACTGTTGTTGGTGCAAACGCAAAGCTGAAGAAGAAGAAGA 1633
> AT3G45240.1 | Symbols: GRIK1, ATSNAK2 | geminivirus rep interacting
kinase 1 | chr3:16570478-16573740 REVERSE LENGTH=2235
Length=2235
Score = 1831 bits (991), Expect = 0.0
Identities = 1129/1196 (94%), Gaps = 8/1196 (1%)
Strand=Plus/Plus
Query 1 CATAATTTTTGGAGTAGATAATGTTTCGCGATAGTTTTTCATTTGTCCAAGCGATGAGTT 60
||||| |||||||||||||||||||| | ||||||||| |||||| ||||| ||||||||
Sbjct 729 CATAAATTTTGGAGTAGATAATGTTTTGTGATAGTTTTGCATTTGCCCAAGTGATGAGTT 788
Query 61 GCTTCGGTTGTTTTGGTGGCTCTGAGAGATCAAGACAGTCACCAAATCCATATGATGATG 120
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 789 GCTTCGGGTGTTTTGGTGGCTCTGAGAGATCAAGACATTCACCAAATCCATATGATGATG 848
Query 121 ATACATATTCCAATGATGGTGATGTAACCAGCAATGTGGGAGGAGATGATGAAG-A--AG 177
||||||||||| ||||| ||| || |||||||||| ||||||||||||||||| | ||
Sbjct 849 ATACATATTCCCATGATAGTGGTGAAACCAGCAATCCGGGAGGAGATGATGAAGAAGGAG 908
Query 178 -A-A-GAAGAGGAAGTAGAGGAGC-AGAGCCGTTCCAATCGATCTGAGGAAATTTTGAAA 233
| | ||||||||||||||||||| | || |||||||| |||||||| ||||||||||||
Sbjct 909 AAGAGGAAGAGGAAGTAGAGGAGCTA-AGTCGTTCCAAACGATCTGAAGAAATTTTGAAA 967
Query 234 TCTAAATTACAAAATGGACTAATCTGCAGGCAGTTTCCAGTGAAGGAAACTAATAAACTT 293
| |||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 968 TGTAAACTACAAAATGGACTAGTCTGCAGGCAGTTTCCAGTCAAGGAAACTAATAAACTT 1027
Query 294 ATACGTGGAGAGGATGAAGATGGAAATAAGACAATAAATGAGTTTGTTCGTGAGCGTAAA 353
| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1028 ACACGCGGAGAGGATGAAGATGGAAACAAGACAATAAATGAGTTTGTTCGTGAGCGTAAA 1087
Query 354 ATTGGATCTGGTAGTTATGGGAAAGTGGTTCTATATCGAAGCACTGTCGATGACAAGCAT 413
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1088 ATTGGATCTGGTAGTTATGGGAAAGTGGTTCTCTATCGAAGCACTGTCGATGACAAGCAT 1147
Query 414 TATGCTATTAAGGCTTTTCACAAGTCATATTTATTAAAGCTACGGGTTGCACCTTCAGAA 473
||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||
Sbjct 1148 TATGCTATTAAGGCTTTTCACAAGTCACATTTATCGAGGCTACGGGTTGCACCTTCAGAA 1207
Query 474 ACTGCGATGGGGGATGTTCTTCGTGAGGTTATGATTATGAAAATCCTGGAGCATCCTAAT 533
||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1208 ACTGCTATGGGTGATGTTCTTCGTGAGGTTATGATTATGAAAACCCTGGAGCATCCTAAT 1267
Query 534 ATCGTTAATCTCATTGAGGTGATAGATGACCCTGAGTTTGATGATTTTTACATGGTTCTC 593
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1268 ATCGTTAATCTCATTGAGGTGATTGATGACCCTGAGTTTGATGATTTTTACATGGTTCTC 1327
Query 594 GAATATGTTGATGGAAAATGGGCCTATGATGATTCTGGACCACCGGGTGCTCTCGGAGAA 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1328 GAATATGTTGATGGAAAATGGGCCTATGATGATTCTGGACCACCGGGTGCTCTCGGAGAA 1387
Query 654 ACTATTGCTAGAAAGTACTTGCGCGATGTAGTTACTGGCCTCATGTACCTCCATGCTCAT 713
| || |||||||||||||||||||||||||||| | |||||||||||||| |||||||||
Sbjct 1388 ATTACTGCTAGAAAGTACTTGCGCGATGTAGTTGCCGGCCTCATGTACCTTCATGCTCAT 1447
Query 714 AATGTAATTCATGGGGACATCAAACCGGACAATTTGCTGGTTACTAGTACCGGGAGAGTG 773
|||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1448 AATGTAATTCATGGTGACATCAAACCTGACAATTTACTGGTTACTAGTACCGGGAGAGTG 1507
Query 774 AAAATAGGAGATTTCAGTGTCAGCCAAGTGTTCAAGGATGATGATGATCAACTCCGTAGA 833
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1508 AAAATAGGAGATTTCAGTGTCAGCCAAGTATTCAAAGATGATGATGATCAACTCCGTAGA 1567
Query 834 TCTCCCGGCACTCCTGTCTTTACTGCCCCAGAATGTTGTTTAGGTATAACATACAGTGGA 893
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1568 TCACCCGGCACTCCTGTCTTTACTGCCCCAGAATGTTGTTTAGGTATAACATACAGTGGA 1627
Query 894 AGATCTGCAGACACGTGGGCAGTGGGAGTTACTTTGTATTGTATGATATTAGGACAATAC 953
||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1628 AGATCTGCAGATACGTGGGCAGTAGGAGTTACTTTGTATTGTATGATTTTAGGACAATAC 1687
Query 954 CCGTTTCTGGGTGATACACTTCAAGATACTTATGACAAGATTGTTCACAACCCGTTGATA 1013
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1688 CCATTTCTGGGTGATACACTTCAAGATACTTATGACAAGATTGTTCACAACCCGTTGATA 1747
Query 1014 ATCCCAGATGGACTGAATCCTCATCTCAGGGACTTGATCGAAGGTCTCCTTTGCAAAGAT 1073
|| || || ||||| ||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1748 ATACCGGAAGGACTCAATCCTCGTCTAAGGGACTTGATCGAAGGTCTCCTTTGCAAAGAT 1807
Query 1074 CCAAACCAGAGGATGACGTTGAAAGCTGTGGCGGAGCATCCATGGGTCACAGGAGAAGAC 1133
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1808 CCAAACCAGAGGATGACGTTGAAAGCTGTGGCGGAGCATCCATGGATCACAGGAGAAGAC 1867
Query 1134 GGGGCTATTTCAGAATATTTTTGTTGGTGCAAACGCAAAGCTGAAGAAGAGGAAGA 1189
||||||||||| ||||| | |||||||||||||||||||||||||||||| |||||
Sbjct 1868 GGGGCTATTTCGGAATACTGTTGTTGGTGCAAACGCAAAGCTGAAGAAGAAGAAGA 1923
> AT5G60548.1 | Symbols: CPuORF62 | conserved peptide upstream
open reading frame 62 | chr5:24339229-24342590 FORWARD LENGTH=1950
Length=1950
Score = 1133 bits (613), Expect = 0.0
Identities = 1005/1193 (84%), Gaps = 31/1193 (3%)
Strand=Plus/Plus
Query 5 ATTTTTG-G-AGTAGATAATGTTTCGCGATAGTTTTTCATTTGTCC-AAGCGAT-GAGTT 60
||||||| | || |||| |||||||| |||||||||| |||| || | | || | |||
Sbjct 475 ATTTTTGAGAAGGAGATCATGTTTCGTGATAGTTTTTTGTTTGCCCGTA-CCATCG-GTT 532
Query 61 GCTTCGGTTGTTTTGGTGGCTCT-G-AG-AG-ATCAAGACAGTCACCAAATCCATATGAT 116
|||| || || ||||| | ||| | || || | | | ||| || || || || || |||
Sbjct 533 GCTTTGGATGCTTTGGCAGTTCTGGTAGTAGAAACCA-ACAATCGCCTAAGCCCTACGAT 591
Query 117 GATGATACATATTCCAATGATGGTGATGTAACCAGCAATGTGGGAGGAGATGATGAAGAA 176
||||||||| ||||| |||| |||||||||| |||| || ||||||| || ||||||
Sbjct 592 GATGATACACATTCCTGTGATAGTGATGTAACTAGCACTGCAAGAGGAGAAGAAGAAGAA 651
Query 177 GAAGAAGAGGAAGTAGAGGAGCAGAGCCGTTCCAATCGATCTGAGGAAATTTTGAAATCT 236
|| ||||| ||||||||| || ||||||| || || |||||||||||||||||||||| |
Sbjct 652 GATGAAGAAGAAGTAGAGCAGAAGAGCCGCTCTAAACGATCTGAGGAAATTTTGAAATAT 711
Query 237 AAATTACAAAATGGACTAATCTGCAGGCAGTTTCCAGTGAAG-GAAACTAATAAACTTAT 295
| |||| | |||||| |||||||||| || |||||||| || ||||||||| |||||||
Sbjct 712 AGATTAGATAATGGATTAATCTGCAGACACATTCCAGTG-AGAGAAACTAATGAACTTAT 770
Query 296 ACGTGGAGAGGATGAAGATGGAAATAAGACAATAAATGAGTTTGTTCGTGAGCGTAAAAT 355
|||||||||||||||| |||| | |||||||| ||||||| |||||| | | |||||||
Sbjct 771 ACGTGGAGAGGATGAAAATGGTGACAAGACAATCAATGAGTATGTTCGCGTGTGTAAAAT 830
Query 356 TGGATCTGGTAGTTATGGGAAAGTGGTTCTATATCGAAGCACTGTCGATGACAAGCATTA 415
|||||| ||||| ||||| ||||||||| |||||||||||||| | || | | || ||||
Sbjct 831 TGGATCCGGTAGCTATGGTAAAGTGGTTTTATATCGAAGCACTTTAGACGGCCAGTATTA 890
Query 416 TGCTATTAAGGCTTTTCACAAGTCATATTTATTAAAGCTACGGGTTGCACCTTCAGAAAC 475
|||||| ||||| ||||||||||| ||||||||| |||| |||| ||||| ||||| ||
Sbjct 891 TGCTATCAAGGCATTTCACAAGTCGCATTTATTAAGGCTAAGGGTGGCACCGTCAGAGAC 950
Query 476 TGCGATGGGGGATGTTCTTCGTGAGGTTATGATTATGAAAATCCTGGAGCATCCTAATAT 535
||| ||| | |||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 951 TGCTATGAGTGATGTTCTTCGTGAGGTTATGATTATGAAAATTTTGGAGCATCCTAACAT 1010
Query 536 CGTTAATCTCATTGAGGTGATAGATGACCCTGAGTTTGATGATTTTTACATGGTTCTCGA 595
|||||| |||||||||||||||||||||||||| |||| |||||||||||||||| ||
Sbjct 1011 CGTTAACCTCATTGAGGTGATAGATGACCCTGAAACTGATCATTTTTACATGGTTCTTGA 1070
Query 596 ATATGTTGATGGAAAATGGGCCTATGATGATTCTGGACCACCGGGTGCTCTCGGAGA-AA 654
||| |||||||||||||||| ||||| | ||||||||| ||||||||||||||||| ||
Sbjct 1071 ATACGTTGATGGAAAATGGGTGTATGACGGTTCTGGACCGCCGGGTGCTCTCGGAGAGAA 1130
Query 655 CTATTGCTAGAAAGTACTTGCGCGATGTAGTTACTGGCCTCATGTACCTCCATGCTCATA 714
| |||||||||||| ||||| ||| | |||||||| || ||||| || |||||||||
Sbjct 1131 A-ACTGCTAGAAAGTATTTGCGGGATATTGTTACTGGACTGATGTATCTTCATGCTCATG 1189
Query 715 ATGTAATTCATGGGGACATCAAACCGGACAATTTGCTGGTTACTAGTACCGGGAGAGTGA 774
|||| ||||| |||||||| ||||| |||||||||||||||||||||| ||| | |||||
Sbjct 1190 ATGTTATTCACGGGGACATTAAACCCGACAATTTGCTGGTTACTAGTAGCGGTACAGTGA 1249
Query 775 AAATAGGAGATTTCAGTGTCAGCCAAGTGTTCAAGGATGATGATGATCAACTCCGTAGAT 834
| |||||||||||||||||||||||||| |||||||||||||| ||||| || || |||
Sbjct 1250 AGATAGGAGATTTCAGTGTCAGCCAAGTTTTCAAGGATGATGACGATCAGCTGCGCCGAT 1309
Query 835 CTCCCGGCACTCCTGTCTTTACTGCCCCAGAATGTTGTTTAG-----G-TATAACATACA 888
||||||| ||||||||||| ||||| |||||||||||||||| | |||||| || |
Sbjct 1310 CTCCCGGGACTCCTGTCTTCACTGCTCCAGAATGTTGTTTAGTATCAGGTATAACGTATA 1369
Query 889 GTGGAAGATCTGCAGACACGTGGGCAGTGGGAGTTACTTTGTATTGTATGATATTAGGAC 948
|||| ||| |||| || || ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1370 GTGGCAGAGCTGCGGATACATGGGCAGTGGGAGTTACATTGTATTGTATGATATTGGGAC 1429
Query 949 AATACCCGTTTCTGG-GTGATACACTTCAAGATACTTATGACAAGATTGTTCACAACCCG 1007
||||||||||||| | | ||||| ||||| || || || |||||||||||| |||||||
Sbjct 1430 AATACCCGTTTCTTGCG-GATACTCTTCAGGACACCTACGACAAGATTGTTAACAACCC- 1487
Query 1008 T-TGATAATCCCAGATGGACTGAATCCTCATCTCAGGGACTTGATCGAAGGTCTCCTTTG 1066
| |||||||||| |||||| ||||||||| |||||| || ||||||||||||||||||||
Sbjct 1488 TCTGATAATCCCGGATGGATTGAATCCTCTTCTCAGAGATTTGATCGAAGGTCTCCTTTG 1547
Query 1067 CAAAGATCCAAACCAGAGGATGACGTTGAA-AGCTGTGGCGGAGCATCCATGGGTCACAG 1125
||||||||| | |||||| ||||| |||| | |||| |||||||||||||||||| |
Sbjct 1548 CAAAGATCCGAGCCAGAGAATGACACTGAAGAA-TGTGTCGGAGCATCCATGGGTCATTG 1606
Query 1126 GAGAAGACGGGGCTATTTCA-GAA-TATTTTTGTTGGTGCAAACGCAAAGCTG 1176
||||||||||| | || || | | ||||||||||||||||||||||| ||||
Sbjct 1607 GAGAAGACGGG-C-ATGTCCCGGAGTATTTTTGTTGGTGCAAACGCAATGCTG 1657
> AT5G60550.1 | Symbols: GRIK2, ATSNAK1 | geminivirus rep interacting
kinase 2 | chr5:24339229-24342590 FORWARD LENGTH=1950
Length=1950
Score = 1133 bits (613), Expect = 0.0
Identities = 1005/1193 (84%), Gaps = 31/1193 (3%)
Strand=Plus/Plus
Query 5 ATTTTTG-G-AGTAGATAATGTTTCGCGATAGTTTTTCATTTGTCC-AAGCGAT-GAGTT 60
||||||| | || |||| |||||||| |||||||||| |||| || | | || | |||
Sbjct 475 ATTTTTGAGAAGGAGATCATGTTTCGTGATAGTTTTTTGTTTGCCCGTA-CCATCG-GTT 532
Query 61 GCTTCGGTTGTTTTGGTGGCTCT-G-AG-AG-ATCAAGACAGTCACCAAATCCATATGAT 116
|||| || || ||||| | ||| | || || | | | ||| || || || || || |||
Sbjct 533 GCTTTGGATGCTTTGGCAGTTCTGGTAGTAGAAACCA-ACAATCGCCTAAGCCCTACGAT 591
Query 117 GATGATACATATTCCAATGATGGTGATGTAACCAGCAATGTGGGAGGAGATGATGAAGAA 176
||||||||| ||||| |||| |||||||||| |||| || ||||||| || ||||||
Sbjct 592 GATGATACACATTCCTGTGATAGTGATGTAACTAGCACTGCAAGAGGAGAAGAAGAAGAA 651
Query 177 GAAGAAGAGGAAGTAGAGGAGCAGAGCCGTTCCAATCGATCTGAGGAAATTTTGAAATCT 236
|| ||||| ||||||||| || ||||||| || || |||||||||||||||||||||| |
Sbjct 652 GATGAAGAAGAAGTAGAGCAGAAGAGCCGCTCTAAACGATCTGAGGAAATTTTGAAATAT 711
Query 237 AAATTACAAAATGGACTAATCTGCAGGCAGTTTCCAGTGAAG-GAAACTAATAAACTTAT 295
| |||| | |||||| |||||||||| || |||||||| || ||||||||| |||||||
Sbjct 712 AGATTAGATAATGGATTAATCTGCAGACACATTCCAGTG-AGAGAAACTAATGAACTTAT 770
Query 296 ACGTGGAGAGGATGAAGATGGAAATAAGACAATAAATGAGTTTGTTCGTGAGCGTAAAAT 355
|||||||||||||||| |||| | |||||||| ||||||| |||||| | | |||||||
Sbjct 771 ACGTGGAGAGGATGAAAATGGTGACAAGACAATCAATGAGTATGTTCGCGTGTGTAAAAT 830
Query 356 TGGATCTGGTAGTTATGGGAAAGTGGTTCTATATCGAAGCACTGTCGATGACAAGCATTA 415
|||||| ||||| ||||| ||||||||| |||||||||||||| | || | | || ||||
Sbjct 831 TGGATCCGGTAGCTATGGTAAAGTGGTTTTATATCGAAGCACTTTAGACGGCCAGTATTA 890
Query 416 TGCTATTAAGGCTTTTCACAAGTCATATTTATTAAAGCTACGGGTTGCACCTTCAGAAAC 475
|||||| ||||| ||||||||||| ||||||||| |||| |||| ||||| ||||| ||
Sbjct 891 TGCTATCAAGGCATTTCACAAGTCGCATTTATTAAGGCTAAGGGTGGCACCGTCAGAGAC 950
Query 476 TGCGATGGGGGATGTTCTTCGTGAGGTTATGATTATGAAAATCCTGGAGCATCCTAATAT 535
||| ||| | |||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 951 TGCTATGAGTGATGTTCTTCGTGAGGTTATGATTATGAAAATTTTGGAGCATCCTAACAT 1010
Query 536 CGTTAATCTCATTGAGGTGATAGATGACCCTGAGTTTGATGATTTTTACATGGTTCTCGA 595
|||||| |||||||||||||||||||||||||| |||| |||||||||||||||| ||
Sbjct 1011 CGTTAACCTCATTGAGGTGATAGATGACCCTGAAACTGATCATTTTTACATGGTTCTTGA 1070
Query 596 ATATGTTGATGGAAAATGGGCCTATGATGATTCTGGACCACCGGGTGCTCTCGGAGA-AA 654
||| |||||||||||||||| ||||| | ||||||||| ||||||||||||||||| ||
Sbjct 1071 ATACGTTGATGGAAAATGGGTGTATGACGGTTCTGGACCGCCGGGTGCTCTCGGAGAGAA 1130
Query 655 CTATTGCTAGAAAGTACTTGCGCGATGTAGTTACTGGCCTCATGTACCTCCATGCTCATA 714
| |||||||||||| ||||| ||| | |||||||| || ||||| || |||||||||
Sbjct 1131 A-ACTGCTAGAAAGTATTTGCGGGATATTGTTACTGGACTGATGTATCTTCATGCTCATG 1189
Query 715 ATGTAATTCATGGGGACATCAAACCGGACAATTTGCTGGTTACTAGTACCGGGAGAGTGA 774
|||| ||||| |||||||| ||||| |||||||||||||||||||||| ||| | |||||
Sbjct 1190 ATGTTATTCACGGGGACATTAAACCCGACAATTTGCTGGTTACTAGTAGCGGTACAGTGA 1249
Query 775 AAATAGGAGATTTCAGTGTCAGCCAAGTGTTCAAGGATGATGATGATCAACTCCGTAGAT 834
| |||||||||||||||||||||||||| |||||||||||||| ||||| || || |||
Sbjct 1250 AGATAGGAGATTTCAGTGTCAGCCAAGTTTTCAAGGATGATGACGATCAGCTGCGCCGAT 1309
Query 835 CTCCCGGCACTCCTGTCTTTACTGCCCCAGAATGTTGTTTAG-----G-TATAACATACA 888
||||||| ||||||||||| ||||| |||||||||||||||| | |||||| || |
Sbjct 1310 CTCCCGGGACTCCTGTCTTCACTGCTCCAGAATGTTGTTTAGTATCAGGTATAACGTATA 1369
Query 889 GTGGAAGATCTGCAGACACGTGGGCAGTGGGAGTTACTTTGTATTGTATGATATTAGGAC 948
|||| ||| |||| || || ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1370 GTGGCAGAGCTGCGGATACATGGGCAGTGGGAGTTACATTGTATTGTATGATATTGGGAC 1429
Query 949 AATACCCGTTTCTGG-GTGATACACTTCAAGATACTTATGACAAGATTGTTCACAACCCG 1007
||||||||||||| | | ||||| ||||| || || || |||||||||||| |||||||
Sbjct 1430 AATACCCGTTTCTTGCG-GATACTCTTCAGGACACCTACGACAAGATTGTTAACAACCC- 1487
Query 1008 T-TGATAATCCCAGATGGACTGAATCCTCATCTCAGGGACTTGATCGAAGGTCTCCTTTG 1066
| |||||||||| |||||| ||||||||| |||||| || ||||||||||||||||||||
Sbjct 1488 TCTGATAATCCCGGATGGATTGAATCCTCTTCTCAGAGATTTGATCGAAGGTCTCCTTTG 1547
Query 1067 CAAAGATCCAAACCAGAGGATGACGTTGAA-AGCTGTGGCGGAGCATCCATGGGTCACAG 1125
||||||||| | |||||| ||||| |||| | |||| |||||||||||||||||| |
Sbjct 1548 CAAAGATCCGAGCCAGAGAATGACACTGAAGAA-TGTGTCGGAGCATCCATGGGTCATTG 1606
Query 1126 GAGAAGACGGGGCTATTTCA-GAA-TATTTTTGTTGGTGCAAACGCAAAGCTG 1176
||||||||||| | || || | | ||||||||||||||||||||||| ||||
Sbjct 1607 GAGAAGACGGG-C-ATGTCCCGGAGTATTTTTGTTGGTGCAAACGCAATGCTG 1657
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61094063265
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5