BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937190

Length=394
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G45243.1 | Symbols:  | ECA1 gametogenesis related family pro...   440    4e-123


> AT3G45243.1 | Symbols:  | ECA1 gametogenesis related family protein 
| chr3:16575823-16576173 FORWARD LENGTH=351
Length=351

 Score =  440 bits (238),  Expect = 4e-123
 Identities = 322/360 (89%), Gaps = 15/360 (4%)
 Strand=Plus/Plus

Query  21   ATGCAAAGAATGTGGGAAACGATCATATTAGCTTTGATAATGGTACTATCAATATCTATA  80
            ||||||||||||||||  |||||||| ||||||||||| |  ||||||||||||||||||
Sbjct  1    ATGCAAAGAATGTGGGTGACGATCATGTTAGCTTTGAT-A--GTACTATCAATATCTATA  57

Query  81   CAAACACAGGGAAATGAGAAAGTAAATGATCTTGCCCGTGCTCCATCGTCCG-CACTCGC  139
            |||||| |||||||||||||||||||||||||||| |||||||| ||||  | |||| ||
Sbjct  58   CAAACAAAGGGAAATGAGAAAGTAAATGATCTTGCTCGTGCTCCCTCGTT-GACACTAGC  116

Query  140  ACCTCAATCCGAGAATGGAGTATTGCCTAAGCCTATACCTTGTTTAAACGACCT-AA-CT  197
            ||||||||| |||||||||||||||||||||||| ||||||||||||||||| | || ||
Sbjct  117  ACCTCAATCAGAGAATGGAGTATTGCCTAAGCCTCTACCTTGTTTAAACGACTTTAAACT  176

Query  198  AAAATTTCGAATTGTACAAATGCAGTGAAACATTTCCAAATCAAAAGGGTCACAAAAAGC  257
            ||  |||| ||||||||||| |||||||| |||||||||||||||||||||||||||| |
Sbjct  177  AA--TTTCAAATTGTACAAAAGCAGTGAAGCATTTCCAAATCAAAAGGGTCACAAAAAAC  234

Query  258  TGTTGTATCATCCTACTCAGTCTTCC-GAACGATTGTTTCGGTCGTTTATTCGCTATGC-  315
            ||||||||||||||||||| |||||| ||| |||||||| |||||||||||||| |||  
Sbjct  235  TGTTGTATCATCCTACTCAATCTTCCAGAA-GATTGTTTTGGTCGTTTATTCGCCATGAA  293

Query  316  GCTGGATCTATCATACTATCCTGACGGTTGTCT-GCAAAGCACTAGGTTACATTAAATAA  374
            | |||||||||| |||| |||| ||| ||| || ||||||||||||||||||||||||||
Sbjct  294  G-TGGATCTATCGTACTGTCCTTACGATTG-CTTGCAAAGCACTAGGTTACATTAAATAA  351



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18599067130


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5