BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937191
Length=392
Score E
Sequences producing significant alignments: (Bits) Value
AT3G45245.1 | Symbols: | ECA1 gametogenesis related family pro... 477 3e-134
AT3G45243.1 | Symbols: | ECA1 gametogenesis related family pro... 263 1e-69
> AT3G45245.1 | Symbols: | ECA1 gametogenesis related family protein
| chr3:16578384-16578734 FORWARD LENGTH=351
Length=351
Score = 477 bits (258), Expect = 3e-134
Identities = 320/351 (91%), Gaps = 0/351 (0%)
Strand=Plus/Plus
Query 21 ATGCAAAGAATGTGGGCTACGATCGTGTTAGCTTTGATAGTAGTACTATCAATATCTATA 80
||| ||||||||||||| ||| || || ||||||||||| | ||||| ||| ||| |||
Sbjct 1 ATGGAAAGAATGTGGGCGACGTTCATGCTAGCTTTGATAATTTTACTAACAACATCCATA 60
Query 81 CAAACAAAGAGTAATGAGAAAAGAAATGATATTGCCGGTCCTCCATCGTCTGCACTAGCA 140
||| ||||| ||||||||||| ||||||||||||||||| |||||||| || || |||||
Sbjct 61 CAAGCAAAGGGTAATGAGAAAGGAAATGATATTGCCGGTGCTCCATCGCCTACATTAGCA 120
Query 141 CCTCAATCAGAGAACGGGTTATTACCTAATCCTACATCTTGTTTGGCCGATGTAAAAACA 200
|||||||||||||| || ||||||||||||||| |||||||||||||||| |||||||||
Sbjct 121 CCTCAATCAGAGAATGGATTATTACCTAATCCTGCATCTTGTTTGGCCGACGTAAAAACA 180
Query 201 ATTCCGAATTGTGTAAAAGCAGTGAAACGCTTCAAACTCAAAAATGTCACAAAGAAATGT 260
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 181 ATTCCGAATTGTGTAAAAGCAGTGAAGCGCTTCAAACTCAGAAATGTCACAAAGAAATGT 240
Query 261 TGTGTCATCCTACTAAATCTTCCGGAAGATTGTTTTGGATATTTGTTTCCTATTCATTGG 320
|||||||||||||| ||||||||||||||||||| ||||||||||||||| ||| ||||
Sbjct 241 TGTGTCATCCTACTTTATCTTCCGGAAGATTGTTTCGGATATTTGTTTCCTGTTCGTTGG 300
Query 321 ATCTATCGTTTTTTGCTTAAGATTGCCTGCAAAATACTAGGTCACATTTGA 371
||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATCTATCGTATTCTGCTTAAGATTGCCTGCAAAATACTAGGTCACATTTGA 351
> AT3G45243.1 | Symbols: | ECA1 gametogenesis related family protein
| chr3:16575823-16576173 FORWARD LENGTH=351
Length=351
Score = 263 bits (142), Expect = 1e-69
Identities = 291/359 (81%), Gaps = 25/359 (7%)
Strand=Plus/Plus
Query 21 ATGCAAAGAATGTGGGCT-ACGATCGTGTTAGCTTTGATAGTAGTACTATCAATATCTAT 79
|||||||||||||||| | |||||| ||||||||||| | |||||||||||||||||||
Sbjct 1 ATGCAAAGAATGTGGG-TGACGATCATGTTAGCTTTG--A-TAGTACTATCAATATCTAT 56
Query 80 ACAAACAAAGAGTAATGAGAAAAG-AAATGATATTGC-CGGTCCTCCATCGTCTG-CACT 136
|||||||||| | ||||||||| | ||||||| |||| || | |||| |||| || ||||
Sbjct 57 ACAAACAAAGGGAAATGAGAAA-GTAAATGATCTTGCTCG-TGCTCCCTCGT-TGACACT 113
Query 137 AGCACCTCAATCAGAGAACGG-GTTATTACCTAATCCTAC-ATCTTGTTTGGCCGA-TGT 193
|||||||||||||||||| || || ||| ||||| ||| | | ||||||| ||| | |
Sbjct 114 AGCACCTCAATCAGAGAATGGAGT-ATTGCCTAAGCCT-CTACCTTGTTTAAACGACTTT 171
Query 194 AAAAACAATTCCGAATTGTGTAAAAGCAGTGAAACGCTTC-AAACTCAAAAATGTCACAA 252
||| |||| | |||||| |||||||||||| | ||| ||| |||||| |||||||
Sbjct 172 AAACT-AATTTCAAATTGTACAAAAGCAGTGAAGCATTTCCAAA-TCAAAAGGGTCACAA 229
Query 253 AGAAA-TGTTGTGTCATCCTACTAAATCTTCCGGAAGATTGTTTTGGATA-TTTGTTT-C 309
| ||| |||||| |||||||||| |||||||| |||||||||||||| | ||| || |
Sbjct 230 A-AAACTGTTGTATCATCCTACTCAATCTTCCAGAAGATTGTTTTGG-TCGTTTATTCGC 287
Query 310 CTATTCATTGGATCTATCGTTTTTTGCTTAAGATTGCCTGCAAAATACTAGGTCACATT 368
| || | |||||||||||| | | |||| |||||| |||||| ||||||| |||||
Sbjct 288 C-ATGAAGTGGATCTATCGTACTGTCCTTACGATTGCTTGCAAAGCACTAGGTTACATT 345
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18498531632
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5