BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937192

Length=391
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G45248.1 | Symbols:  | ECA1 gametogenesis related family pro...   438    2e-122


> AT3G45248.1 | Symbols:  | ECA1 gametogenesis related family protein 
| chr3:16581929-16582273 FORWARD LENGTH=345
Length=345

 Score =  438 bits (237),  Expect = 2e-122
 Identities = 307/341 (90%), Gaps = 3/341 (1%)
 Strand=Plus/Plus

Query  12   ATGCAAAACATGTTGGCTATGAGCATGATAGCTTTGATTATCATCCTATCAATATTTATA  71
            |||||||| ||||||  || || ||||||| ||||||||||||| || ||||||||||||
Sbjct  1    ATGCAAAAAATGTTGAATACGATCATGATACCTTTGATTATCATGCTTTCAATATTTATA  60

Query  72   CAAACAAAAGGAAATGATCTTGCACCGATTCCGTCGTCGATAGCACCAGAACCACAATCA  131
            |||||||||||||||||||||||||| ||||| |||||| || |||||||||| ||||||
Sbjct  61   CAAACAAAAGGAAATGATCTTGCACCAATTCCATCGTCGGTATCACCAGAACCTCAATCA  120

Query  132  GATAACCAATTCTTTCTTGATCCAATAACTTGTATTCACGATGTGAAAACGATTCCAAAG  191
            || ||||||||||||||||| ||| |||||||||||||||||||||||| | ||||||||
Sbjct  121  GAGAACCAATTCTTTCTTGACCCACTAACTTGTATTCACGATGTGAAAAAGGTTCCAAAG  180

Query  192  TGTATGGATGCTGTGTTGCACTTTCGATTCAAGCAGGTCACAAAAAAGTGTTGCTATGCC  251
            |||||||| || ||||||||||| |||||||| ||||||||||| |||||||| |||| |
Sbjct  181  TGTATGGACGCAGTGTTGCACTTCCGATTCAAACAGGTCACAAAGAAGTGTTGTTATGTC  240

Query  252  ATGCTCTCTCTTCCCGAAAGTTG-TTTCGGGGTATTGTTTCCTATTCCTTATGTCTACCA  310
            ||  ||||||||||||||||||| ||| ||| | |||||||||||||||||| |||||||
Sbjct  241  ATATTCTCTCTTCCCGAAAGTTGCTTT-GGGTTTTTGTTTCCTATTCCTTATCTCTACCA  299

Query  311  TCTTCTTCTTAAGGCTGCTTGCAAAATTACTTACTCACCAT  351
            || |||||||||||||||||||||| |||||||||||||||
Sbjct  300  TCCTCTTCTTAAGGCTGCTTGCAAA-TTACTTACTCACCAT  339



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18448263883


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5