BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937195
Length=1393
Score E
Sequences producing significant alignments: (Bits) Value
AT3G45260.1 | Symbols: | C2H2-like zinc finger protein | chr3:... 2025 0.0
AT1G55110.1 | Symbols: AtIDD7, IDD7 | indeterminate(ID)-domain ... 377 1e-103
AT5G03150.1 | Symbols: JKD | C2H2-like zinc finger protein | ch... 374 2e-102
AT3G13810.2 | Symbols: IDD11 | indeterminate(ID)-domain 11 | ch... 372 6e-102
> AT3G45260.1 | Symbols: | C2H2-like zinc finger protein | chr3:16596381-16598698
REVERSE LENGTH=1885
Length=1885
Score = 2025 bits (1096), Expect = 0.0
Identities = 1308/1405 (93%), Gaps = 36/1405 (3%)
Strand=Plus/Plus
Query 1 TCAACTAAACCAATATCAACATGATGATGCCAGATGATCATCATCATCTCTCATTTCCCA 60
|||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 129 TCAACTAAACCAATATCAGCATGATGATGCCAGATGATCATCATCCCCTCTCATTTCCCA 188
Query 61 GCTATGTCCTTCACCAAGAACACATCACCCCAAATCCTAACCCTAACCCTAATCATACCT 120
|||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||
Sbjct 189 GCTATGTCCTTCACCAAGAACACATCGCTCCAAATCCTAACCCTAACCCTAATCCTACCT 248
Query 121 CCTCTAACTCAGCCAAGAGGAAGAGAAATCTCCCGGGAAATCCAGATCCAGATGCAGAAG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 249 CCTCTAACTCAGCCAAGAGGAAGAGAAATCTCCCGGGAAATCCAGATCCAGATGCAGAAG 308
Query 181 TCATCGCTCTATCGCCAAACTCCCTCATGGCGACAAATCGATTCATATGCGAGATTTGCA 240
||||||||||||| ||||||||||||||| | || ||||||||||| |||||| ||||||
Sbjct 309 TCATCGCTCTATCACCAAACTCCCTCATGACAACTAATCGATTCATCTGCGAGGTTTGCA 368
Query 241 ACAAAGGGTTTAAGAGAGACCAGAACCTTCAGCTTCACCGGAGAGGCCATAACCTTCCAT 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 ACAAAGGATTTAAGAGAGACCAGAACCTTCAGCTTCACCGGAGAGGCCATAACCTTCCAT 428
Query 301 GGAAGCTAAAGCAAAGGACAAACAAGGAGCAAGTGAAGAAAAAAGTGTACATCTGTCCAG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 GGAAGCTAAAGCAAAGGACAAACAAGGAGCAAGTGAAGAAAAAAGTGTACATCTGTCCAG 488
Query 361 AGAAGAGCT-GCGTACACCATGACCCGGCCCGAGCCCTCGGTGACTTAACCGGAATCAAG 419
|||||| || |||||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 489 AGAAGA-CTTGCGTACACCATGACCCGGCCCGAGCCCTTGGTGACTTAACTGGAATTAAG 547
Query 420 AAGCATTTCAGCAGAAAACATGGTGAGAAA-AAGTGGAAATGTGACAAGTGTTCCAAGAA 478
|||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 548 AAGCATTTCAGCAGGAAACATGGTGA-AAAGAAGTGGAAATGTGACAAGTGTTCCAAGAA 606
Query 479 ATATGCTGTCATGTCCGATTGGAAAGCTCATAGCAAGATTTGTGGTACTAGAGAATACAG 538
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 607 ATATGCTGTCATGTCCGATTGGAAAGCTCATAGCAAGATTTGTGGTACTAAAGAATACAG 666
Query 539 ATGTGACTGTGGTACCCTCTTTTCCAGGAAAGATAGTTTCATCACACATAGAGCATTCTG 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 ATGTGACTGTGGTACCCTCTTTTCCAGGAAAGATAGTTTCATCACACATAGAGCATTCTG 726
Query 599 TGACGCCTTAGCTGAAGAGAATGCTAGATTCGTCTCAGTTCCACCAGCACCAGCCGCACC 658
|||||| ||||||||||||| ||||||||| |||||||||||||||||||| | |||
Sbjct 727 TGACGCTTTAGCTGAAGAGAGTGCTAGATTTGTCTCAGTTCCACCAGCACC--C-GCA-- 781
Query 659 GGCACCCGCATATTTGAACAATCCCCCGGATGGGGAAGTCAACCTTGGAAACATCAATCA 718
|||||||||||| ||| ||||| ||||||||||| |||||| ||||| ||
Sbjct 782 ----------TATTTGAACAATGCCCTGGATGTGGAAGTCAACCATGGAAATATCAACCA 831
Query 719 AAATCATCAACAACGACAAG-TTCATACTACATCTTCTCCATTGGACCAACCCGGTTTCA 777
|||||||||||||||||| | || ||||||| || || | |||||||||||| ||||| |
Sbjct 832 AAATCATCAACAACGACA-GCTTAATACTACTTCGTCACAATTGGACCAACCTGGTTTTA 890
Query 778 ATATCCA-TCGCAATGACATTGCCTTTTTGGGACAAACCTTACCAACCAACGTTTTTGCG 836
||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 ATA-CCAATCGCAATAACATTGCCTTTTTGGGACAAACCTTACCAACCAACGTTTTTGCG 949
Query 837 TCCTCATCATCCCCATCACCTCGTAGTGCATCCGACTCCCTTCAAAATTTATGGCATTTA 896
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 950 TCCTCATCATCTCCATCACCTCGTAGTGCATCCGACTCCCTTCAAAATCTATGGCATTTA 1009
Query 897 CAAGGACAATCATCTCACCAGTGGCTTCTCAATGAAAACAAGAACAACAACA------TT 950
|||||||||||||||||||| ||||||||||| |||||||| |||||||||| ||
Sbjct 1010 CAAGGACAATCATCTCACCAATGGCTTCTCAACGAAAACAACAACAACAACAACAACATT 1069
Query 951 CTCCAAAGGGGAATCTCCAAGAATCAAGAAGAATGTGAGATCAAGAATGTGATTAGTAAT 1010
|||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||
Sbjct 1070 CTCCAAAGGGGAATCTCCAAAAATCAAGAAGAACATGAGATGAAGAATGTGATTAGTAAT 1129
Query 1011 GGGTCTTTGTTCTCTTCGGAAGCACGCAACAACACTAATAGTTATAACCAAGACTGTGGA 1070
|| ||||||||||||||||||||||| ||||||||||||| |||||||||| || |||||
Sbjct 1130 GGTTCTTTGTTCTCTTCGGAAGCACGAAACAACACTAATAATTATAACCAAAACGGTGGA 1189
Query 1071 CAAAGAGCATCAATGTCAGCCACGGCATTGCTACAAAAGGCAGCTCAAATGGGATCAAAG 1130
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1190 CAAATAGCATCAATGTCAGCCACGGCATTGCTACAAAAGGCAGCTCAAATGGGATCAAAG 1249
Query 1131 AGATCATCATCATCAAGCTCAAACAATAGCAAGACTTTTGGTCTAATAACCTCTATCTTC 1190
|||||||||||| | |||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 1250 AGATCATCATCA--A-GCTCAAGCAATAGCAAGACTTTTGGTCTAATGACCTCTATCTTC 1306
Query 1191 AACAACAAACAAGGAGAGAATATCAAAACAAAGGAAGTTGATGAAAGAGGCTTCACGAGA 1250
||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1307 AACAACAAACAAGCAGAGAATATCAAAACTAAGGAAGTTGATGAAAGAGGTTTCACGAGA 1366
Query 1251 GACTTTCTTGGTGTGGGAAGTCAACACCGTCCTTGGCCATTATTGATGGTCAACCATAAT 1310
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 1367 GACTTTCTTGGTGTGGGAAGTCAACACCGTTCTTGGCCGTTATTGATGGTCAACCATAAT 1426
Query 1311 CTTCCCA-ACTCGTCTCCTTCGGCCACCACTGACGGCACACCAACCGCGGACATGAACCA 1369
||||| | ||||||||||| ||||| |||| ||||||||||||||||| |||||||||||
Sbjct 1427 CTTCC-AGACTCGTCTCCTCCGGCCTCCACGGACGGCACACCAACCGCCGACATGAACCA 1485
Query 1370 GTAAATCTTGTATTGTTCATG-ATA 1393
|||| |||||||||||||||| |||
Sbjct 1486 GTAA-TCTTGTATTGTTCATGTATA 1509
> AT1G55110.1 | Symbols: AtIDD7, IDD7 | indeterminate(ID)-domain
7 | chr1:20560284-20563171 REVERSE LENGTH=1580
Length=1580
Score = 377 bits (204), Expect = 1e-103
Identities = 407/503 (81%), Gaps = 22/503 (4%)
Strand=Plus/Plus
Query 135 AAGAGGAAGAGAAATCTCCCGGGAAATCCAGATCCAGATGCAGAAGTCATCG-CTCTATC 193
|||||||||||||||| || ||||||||||| ||||| |||||||| || | || ||||
Sbjct 277 AAGAGGAAGAGAAATCAACCAGGAAATCCAGACCCAGAAGCAGAAGTGATGGCCT-TATC 335
Query 194 GCCAAACTCCCTCATGGCGACAAATC-GATTCATATGCGAGATTTGCAACAAAGGGTTT- 251
||||| | || ||||||||||| | |||||||||| ||| | ||||||||||| |||
Sbjct 336 ACCAAAGACACTAATGGCGACAAA-CAGATTCATATGTGAGGTCTGCAACAAAGGTTTTC 394
Query 252 AAGAGAGACCAGAACCTT-CAGCTTCACCGGAGAGGCCATAACCTTCCATGGAAGC-TAA 309
|| |||||||| || ||| || |||||| |||||| ||||| || || ||||||| |||
Sbjct 395 AA-AGAGACCA-AAACTTGCAACTTCACAAGAGAGGACATAATCTACCGTGGAAGCTTAA 452
Query 310 AGCAAAGGA-CAAACAAGGA-GCAAGTGAAGAAAAAAGTGTACATCTGTCCAGAG-AAGA 366
| |||| || ||||||| || | || | ||| ||||| || | ||||||||| ||
Sbjct 453 A-CAAA-GATCAAACAAAGATG-TGGTTAGGAAGAAAGTTTATGTTTGTCCAGAGCCAG- 508
Query 367 GCTGCGTACACCATGACCCGGCCCGAGCCCTCGGTGACTTAACCGGAATCAAGAAGCATT 426
|||| || || || | || | |||| || ||||||||||||||||||||||||||||
Sbjct 509 GCTGTGTCCATCACCATCCATCGAGAGCTCTTGGTGACTTAACCGGAATCAAGAAGCATT 568
Query 427 TCAGCAGAAAACATGGTGAGAA-AAAGTGGAAATGTGACAAGTGTTCCAAGAAATATGCT 485
|| |||||||||||| ||||| ||| ||||||||||| ||||||||||||||||||||
Sbjct 569 TCTTCAGAAAACATGGCGAGAAGAAA-TGGAAATGTGAAAAGTGTTCCAAGAAATATGCG 627
Query 486 GT-CATGTCCGATTGGAAAGCTCATAGC-AAGATTTGTGGTACTAGAGAATACAGATGTG 543
|| || || |||||||| |||||| || |||| |||||| |||| |||||||| ||| |
Sbjct 628 GTGCAA-TCAGATTGGAAGGCTCAT-GCTAAGACTTGTGGCACTAAAGAATACAAATGCG 685
Query 544 ACTGTGGTACCCTCTTTTCCAGGAAAGATAGTTTCATCACACATAGAGCATTCTGTGACG 603
||||||| || |||||||| |||| ||||||||||| || ||||||||||| || || |
Sbjct 686 ACTGTGGAACTCTCTTTTCTAGGAGGGATAGTTTCATAACTCATAGAGCATTTTGCGATG 745
Query 604 CCTTAGCTGAAGAGAATGCTAGA 626
| ||||| ||||||| ||| |||
Sbjct 746 CATTAGCAGAAGAGAGTGCAAGA 768
> AT5G03150.1 | Symbols: JKD | C2H2-like zinc finger protein |
chr5:745644-749007 FORWARD LENGTH=2046
Length=2046
Score = 374 bits (202), Expect = 2e-102
Identities = 432/540 (80%), Gaps = 27/540 (5%)
Strand=Plus/Plus
Query 89 CCCAAATCCTAACCCTAACCCTAAT-C-ATACC-TCCTC-TAACTCAGCCAAGAGGAAGA 144
||| ||| ||||||||||||| ||| | | ||| ||| | | |||||||||| |||||
Sbjct 313 CCCTAATTCTAACCCTAACCCAAATGCGAAACCAAACTCTTCA-TCAGCCAAGAAGAAGA 371
Query 145 GAAATCTCCCGGGAAATCCAGATCCAGATGCAGAAGTCATCGCTCTATCGCCAAAC-TCC 203
|||||| || || | ||||||||||||||| || ||||||||||||||||| ||| |
Sbjct 372 GAAATCAACCTGGCACTCCAGATCCAGATGCTGATGTCATCGCTCTATCGCC-AACAACA 430
Query 204 CTCATGGCGACAAATC-GATTCATATGCGAGATTTGCAACAAAGGGTTT-AAGAGAGACC 261
|||||||| ||||| | ||||| | |||||||| ||||||||||||||| || || ||||
Sbjct 431 CTCATGGCAACAAA-CAGATTCGTGTGCGAGATCTGCAACAAAGGGTTTCAA-AGGGACC 488
Query 262 AGAACCTT-CAGCTTCACCGGAGAGGCCATAACCTTCCATGGAAGCTAAAGCAAAGG-AC 319
|||| || || || || || | ||||| |||||||||||||||||||||||| || |
Sbjct 489 AGAA-TTTACAACTACATCGCCGTGGCCACAACCTTCCATGGAAGCTAAAGCAACGGTCC 547
Query 320 AAACAAGGAGCAAGTGAAGAAAAAAGTGTACATCTGTCCAGA-GAAGAGC-TGCGTACAC 377
||||||| || | | ||||| ||||| ||||| ||||| | |||| | || ||||||
Sbjct 548 AAACAAGAAGTGA-TAAAGAAGAAAGTATACATATGTCC-TATCAAGA-CTTGTGTACAC 604
Query 378 CATGA-CCCGGCCCGAGCCCTCGGTGACTTAACCGGAATCAAGAAGCATTTCAGCAGAAA 436
||||| || || | ||||| || ||| | || || |||||||| || | |||| | ||
Sbjct 605 CATGATGCC-TCCAGGGCCCTTGGAGACCTCACTGGGATCAAGAAACACTACAGCCGCAA 663
Query 437 ACATGGTGAGAAA-AAGTGGAAATGTGACAAGTGTTCCAAGAAATATGCTG-TCATGTCC 494
||| ||||| ||| |||||||| ||||| |||||||| |||||||| |||| ||| |||
Sbjct 664 ACACGGTGA-AAAGAAGTGGAAGTGTGAAAAGTGTTCTAAGAAATACGCTGTTCA-GTCT 721
Query 495 GATTGGAAAGCTCATAGC-AAGATTTGTGGTACTAGAGAATACAGATGTGACTGTGGTAC 553
|||||||| || ||| || || | |||||||||| | || || | |||||||||||| ||
Sbjct 722 GATTGGAAGGCACAT-GCGAAAACTTGTGGTACTCGTGAGTATAAATGTGACTGTGGCAC 780
Query 554 CCTCTTTTCCAGGAAAGATAGTTTCATCACACATAGAGCATTCTGTGACGCCTTAGCTGA 613
| || |||||||||||||||||||||||||||||||| ||||| ||||| ||| ||||
Sbjct 781 GTTGTTCTCCAGGAAAGATAGTTTCATCACACATAGAGCGTTCTGCGACGCATTAACTGA 840
> AT3G13810.2 | Symbols: IDD11 | indeterminate(ID)-domain 11 |
chr3:4544364-4547513 FORWARD LENGTH=1898
Length=1898
Score = 372 bits (201), Expect = 6e-102
Identities = 393/483 (81%), Gaps = 23/483 (5%)
Strand=Plus/Plus
Query 156 GGAAATCCAG-ATCCAG-ATGCAGAAGTCATCGCTCTATCGCCAAACTCCCTCATGGCGA 213
|||||| | | | |||| || ||||||| || |||||||| ||||| | || ||||| |
Sbjct 371 GGAAATTCTGTACCCAGAAT-CAGAAGTGATAGCTCTATCACCAAAAACACTAATGGCAA 429
Query 214 CAAATC-GATTCATATGCGAGATTTGCAACAAAGGGTTT-AAGAGAGACCAGAACCTTCA 271
|||| | ||||| | || || || ||||||||||| ||| || ||||||||||| || ||
Sbjct 430 CAAA-CAGATTCGTGTGTGAAATCTGCAACAAAGGTTTTCAA-AGAGACCAGAATCTACA 487
Query 272 GCTTCACCGGAGAGGCCATAACCTTCCATGGAAGCT-AAAGCAAAGGA-CAAACAAGGAG 329
|||||| | ||||| || || || ||||||||||| ||| |||| || | ||||| ||
Sbjct 488 GCTTCATAGAAGAGGTCACAATCTGCCATGGAAGCTGAAA-CAAA-GATCCAACAA--AG 543
Query 330 CAAGTG--AA-GAAAAAAGTGTACATCTGTCCAG-AGAAGAGCTGCGTACACCATGACCC 385
||||| || ||| |||||||| | ||||||| || | ||||| || |||||||| ||
Sbjct 544 -AAGTGATAAGGAAGAAAGTGTATGTATGTCCAGAAGCA-AGCTGTGTCCACCATGATCC 601
Query 386 GGCCCGAGCCCTCGGTGACTTAACCGGAATCAAGAAGCATTTCAGCAGAAAACATGGTGA 445
| |||| ||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 602 ATCTAGAGCTCTCGGTGACTTAACCGGAATCAAGAAGCATTTCTGTAGAAAACATGGTGA 661
Query 446 GAAAAAGTGGAAATGTGACAAGTGTTCCAAGAAATATGCTGT-CATGTCCGATTGGAAAG 504
||| |||||||||||||| |||||||| |||||||||||||| || || ||||| || |
Sbjct 662 GAAGAAGTGGAAATGTGATAAGTGTTCAAAGAAATATGCTGTTCAA-TCAGATTGCAAGG 720
Query 505 CTCATAGC-AAGATTTGTGGTACTAGAGAATACAGATGTGACTGTGGTACCCTCTTTTCC 563
||||| | |||| |||||| || | ||||||||||||||||||||| || ||||||||
Sbjct 721 CTCATT-CTAAGACTTGTGGCACCAAAGAATACAGATGTGACTGTGGCACTCTCTTTTCT 779
Query 564 AGGAAAGATAGTTTCATCACACATAGAGCATTCTGTGACGCCTTAGCTGAAGAGAATGCT 623
|||| ||||||||||| || ||||||||||| ||||| || || |||||||||| |||
Sbjct 780 AGGAGGGATAGTTTCATAACTCATAGAGCATTTTGTGAAGCATTGGCTGAAGAGACTGCA 839
Query 624 AGA 626
|||
Sbjct 840 AGA 842
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68624145015
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5