BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937196

Length=388
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G45275.1 | Symbols:  | ECA1 gametogenesis related family pro...   460    3e-129


> AT3G45275.1 | Symbols:  | ECA1 gametogenesis related family protein 
| chr3:16605894-16606238 FORWARD LENGTH=345
Length=345

 Score =  460 bits (249),  Expect = 3e-129
 Identities = 317/349 (91%), Gaps = 8/349 (2%)
 Strand=Plus/Plus

Query  21   ATGAGTGGGAACAAGCAAGTATGC-GTGTCCATCTTAGCAGTGATGATTTTGATGCTATC  79
            |||||||||||||||| ||| | | ||||||||||||| |||||||||  ||||||||||
Sbjct  1    ATGAGTGGGAACAAGCGAGTGT-CTGTGTCCATCTTAGTAGTGATGATAATGATGCTATC  59

Query  80   AATTTCCCAAATCACGAAAGGTAATAATGATCTTGCGTTTGCTCCAGTGTCGGAGAAAGG  139
             ||||||||||| |||||||||||||||||| |||| ||||||||| ||||  | |||||
Sbjct  60   CATTTCCCAAATTACGAAAGGTAATAATGATTTTGCCTTTGCTCCAATGTCAAAAAAAGG  119

Query  140  GTTGTTGCCAAAACCAGTGTCTTGTGCGGGAGACGCAGAAAAAATTCCAGG-TTGTGTTG  198
             ||||||||||||||| |||||||||||  |||||||| ||||||||| || |||||| |
Sbjct  120  ATTGTTGCCAAAACCATTGTCTTGTGCGACAGACGCAGGAAAAATTCC-GGATTGTGTAG  178

Query  199  AAGCAGTGAAGCATTTCAAATTTAAAAATGTCAAAAAAGAATGTTG-TTTCGTTCTACTT  257
            |||||||||||||||||||||||||||||||||||||||||||||| |||  | ||||| 
Sbjct  179  AAGCAGTGAAGCATTTCAAATTTAAAAATGTCAAAAAAGAATGTTGCTTT-ATACTACTC  237

Query  258  GGTCTTACCGAAGATTGTTTTGGAATTTTGTTTCCTATGCGTTTTGCGTATCGTGAAATG  317
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  238  GGTCTTACCGAAGACTGTTTTGGAATTTTGTTTCCTATGCGTTTTGCGTATCGTGAAATG  297

Query  318  CTTAAGATTACATGCAAAATT-ATAGGCTTTAAGCCACCTTCTTATTAA  365
            |||||||||||||| ||| || |||||||||||||||||||||||||||
Sbjct  298  CTTAAGATTACATGTAAA-TTGATAGGCTTTAAGCCACCTTCTTATTAA  345



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18297460636


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5