BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937199
Length=1271
Score E
Sequences producing significant alignments: (Bits) Value
AT3G45300.1 | Symbols: IVD, ATIVD, IVDH | isovaleryl-CoA-dehydr... 2087 0.0
> AT3G45300.1 | Symbols: IVD, ATIVD, IVDH | isovaleryl-CoA-dehydrogenase
| chr3:16620203-16625048 REVERSE LENGTH=2886
Length=2886
Score = 2087 bits (1130), Expect = 0.0
Identities = 1226/1273 (96%), Gaps = 4/1273 (0%)
Strand=Plus/Plus
Query 1 AACTTACCGGTAATATCGAAG--ATGCAGAGGTTTTTCTCCGCCAAATCGATTCTCGGTT 58
||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 178 AACTTACCGGTAATAACGAAGATATGCAGAGGTTTTTCTCCGCCAGATCGATTCTCGGTT 237
Query 59 ACGTCGTCAAGACGCGGAGGAGGTCGTTCTCTTCTCGTTCTTCGTGTCTCCTATTCGACG 118
||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 238 ACGCCGTCAAGACGCGGAGGAGGTCTTTCTCTTCTCGTTCTTCGTCTCTCCTATTCGACG 297
Query 119 ACACTCAGTTACAGTTTAAAGAAAGTGTATCAAAGTTTGCGCAAGATATTATCGCTCCTC 178
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 298 ACACTCAGTTACAGTTTAAAGAAAGTGTATCCAAGTTTGCGCAAGATAATATCGCTCCTC 357
Query 179 ATGCAGAAAGAATTGATAAAACTAATTCATTTCCAAAGGATGTAAACTTATGGAAGCAAA 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 358 ATGCAGAAAGAATTGATAAAACTAATTCATTTCCAAAGGATGTAAACTTATGGAAGCTAA 417
Query 239 TGGGGGAGTTTAATCTCCATGGAATCACTGCACCAGAGGAATATGGAGGTCTAGGTCTTG 298
|||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 418 TGGGTGAGTTTAATCTCCATGGAATCACTGCGCCAGAGGAATATGGAGGGCTAGGTCTTG 477
Query 299 GTTACTTGTATCATTGTATAGCAATGGAGGAAATCAGTCGGGCCTCGGGGTCAGTTGCTC 358
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 478 GTTACTTGTATCATTGTATTGCAATGGAGGAAATCAGTCGGGCCTCGGGTTCAGTTGCTT 537
Query 359 TGTCTTATGGTGCTCATTCCAACCTTTGCATCAATCAATTGGTGAGGAATGGAACTGCAG 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TGTCTTATGGTGCTCATTCCAACCTTTGCATCAATCAATTGGTGAGGAATGGAACTGCAG 597
Query 419 CCCAAAAGCAAAAGTATTTGCCAAAGCTTATCAGTGGAGAGCATGTTGGTGCTCTTGCAA 478
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 CCCAAAAGGAAAAGTATTTGCCAAAGCTTATCAGTGGAGAGCATGTTGGTGCTCTTGCAA 657
Query 479 TGAGTGAACCCAATGCCGGTTCAGATGTTGTCGGCATGAAATGCAAGGCTGAGAAAGTAG 538
|||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 658 TGAGTGAACCTAATGCTGGTTCAGATGTTGTTGGCATGAAATGCAAGGCTGAGAAGGTAG 717
Query 539 ATGGTGGTTATATACTAAATGGCAACAAGATGTGGTGCACTAATGGTCCGTCTGCTGAAA 598
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 718 ATGGTGGTTATATACTAAATGGCAACAAGATGTGGTGCACTAATGGTCCATCTGCTGAAA 777
Query 599 CACTGGTTGTTTACGCGAAAACTGATACAAAAGCAGGTTCTAAAGGAATCACGGCTTTCA 658
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 778 CACTGGTTGTTTACGCGAAAACTGATACAAAAGCAGGTTCCAAAGGAATCACGGCTTTCA 837
Query 659 TTATAGAGAAGGGAATGACCGGATTCAGTACTGCTCAGAAATTGGACAAACTGGGAATGC 718
| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 838 TCATAGAGAAAGGAATGACCGGATTCAGTACTGCTCAGAAATTGGACAAACTAGGAATGC 897
Query 719 GGGGAAGCGATACGTGTGAGCTTGTTTTTGAGAATTGCTTTGTTCCAGAAGAAAACATTC 778
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||
Sbjct 898 GGGGAAGCGATACGTGTGAGCTTGTTTTTGAGAATTGCTTCGTTCCAGAGGAAAATATTC 957
Query 779 TTGACAAGGAAGGAAAAGGAGTGTATGTTCTGATGTCAGGTCTGGATTTGGAGAGACTTG 838
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 TAGACAAGGAAGGAAAAGGAGTGTATGTTCTGATGTCAGGTCTGGATTTGGAGAGACTTG 1017
Query 839 TTTTATCAGCTGGGCCCTTAGGGATCATGCAGGCATGCCTCGACACCGTACTTCCCTATA 898
||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1018 TTTTAGCAGCTGGGCCCTTAGGGATCATGCAGGCATGCCTCGACAATGTTCTTCCCTATA 1077
Query 899 TTCGCCAGAGAGAACAATTTGGTCGTCCAGTTGGAGAATTTCAGTTTATACAGGGTAAAG 958
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1078 TTCGCCAGAGAGAACAATTTGGTCGTCCAGTTGGGGAATTTCAGTTTATACAGGGTAAAG 1137
Query 959 TTGCGGATATGTACACTGCATTACAATCTTCAAGGTCATACGTCTACTCTGTTGCGAGGG 1018
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1138 TTGCTGATATGTACACTGCATTACAATCTTCAAGGTCATACGTTTACTCTGTTGCGAGGG 1197
Query 1019 ACTGTGACAATGGGAAAGTTGACCCAAAGGACTGCGCTGGAACTATTCTATGTGCGGCCG 1078
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1198 ACTGTGACAATGGGAAAGTTGACCCAAAGGACTGCGCCGGAACTATTCTTTGTGCGGCCG 1257
Query 1079 AGAGAGCAACGCAAGTCGCTTTACAGGCAATACAATGTTTAGGCGGAAATGGGTACATAA 1138
||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1258 AGAGAGCAACGCAGGTCGCTTTACAGGCGATACAATGTTTAGGCGGAAATGGATACATAA 1317
Query 1139 ACGAATATGCAACAGGACGCCTTCTAAGAGATGCGAAA-CTATATGAAATCGGAGCGGGG 1197
|||||||||||||||||||||||||||||||||| ||| |||||||||||||| || |||
Sbjct 1318 ACGAATATGCAACAGGACGCCTTCTAAGAGATGC-AAAGCTATATGAAATCGGTGCAGGG 1376
Query 1198 ACAAGCGAGATCAGAAGGATTGTCATCGGTCGCGAGCTTTTCAAAGAACAATAGAGATAA 1257
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1377 ACAAGCGAGATCAGAAGGATTGTCATCGGTCGCGAGCTTTTCAAAGAAGAATAGAGATAA 1436
Query 1258 GTCTGTTTTCTGC 1270
|||||||||||||
Sbjct 1437 GTCTGTTTTCTGC 1449
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62499678525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5