BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937202

Length=544
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G45320.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   765    0.0  


> AT3G45320.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G60330.1); 
Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria 
- 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; 
Other Eukaryotes - 0 (source: NCBI BLink). | chr3:16631646-16632146 
FORWARD LENGTH=501
Length=501

 Score =  765 bits (414),  Expect = 0.0
 Identities = 472/501 (94%), Gaps = 0/501 (0%)
 Strand=Plus/Plus

Query  24   ATGGAGATGGAGAGTAGAACCTCTGGTTCTGGAGGCATCTCTTTCTGGTCAATCCTACTC  83
            |||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||
Sbjct  1    ATGGAGATGGAGAGTAGAACCTCTGGTTCTCGTGGCATCTCTTTCTGGTCAATCCTATTC  60

Query  84   CACTCTCTTTGGACAACTATTACCGGAATCCTCTTCTTCCGTCTCGCCACCACAAATGGC  143
            |||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||
Sbjct  61   CACTCTCTTTGGACAACTATTATCGGAATCCTCTTCTTCCGTCTCGCAACCACCAATGGC  120

Query  144  CACAAGTCCGGTTTCATCCACTTCTTCGCCATATCCGGAACAATTCTCATTACCTTACCT  203
            |||||||||||||||||||||||||| ||||| ||||||||| | |||||||||||||||
Sbjct  121  CACAAGTCCGGTTTCATCCACTTCTTTGCCATTTCCGGAACAGTACTCATTACCTTACCT  180

Query  204  TGGATCATCCAACTCCTCATCTCCACGACCGTAATACGTCTCCATAAGACCAAAGGTTAC  263
            |||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct  181  TGGATCATCCAACTTCTCATCTCCACGACCGTAATACTTCTGCATAAGACCAAAGGTTAC  240

Query  264  AACCTCATGTGGATAGTTCAGTCACCAACAATATCCAAAAAAGTTGTTGATCACACAAAA  323
            |||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||
Sbjct  241  AACCTCATGTGGATTGTTCAGTCACCAACAATAGCCAAAAAAGTTGTTGATCACACTAAA  300

Query  324  TCTGGTACTTGTTCTGTTTCATCCTCTCCTTCCTCAAATCGCCAAGTTTTGAAGGAAAGT  383
             ||||||||||||||||| |||| ||||||||||||||| | ||||||||||||||||||
Sbjct  301  GCTGGTACTTGTTCTGTTACATCTTCTCCTTCCTCAAATTGTCAAGTTTTGAAGGAAAGT  360

Query  384  GATGCAGAAGAGATTGCGATTAGGATCGTGATTGGCACTGCTGACGGTAAAAGAGATGGT  443
            |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||
Sbjct  361  GATGCAGAAGAGATTGCGATTAGGATCGTGATTGGCGCTGCTGATGGTAAAAGAGAGGGT  420

Query  444  TGCTCTGCAGCTCCTTTAGGCATGCTCATGGAAATTGAAGGAAGAAATAAGACTAAACTG  503
            | |||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  421  TCCTCTCCAGGTTCTTTAGGCATGCTCATGGAAATTGAAGGAAGAAATAAGACTAAACTG  480

Query  504  CTCACAAATGGATCCGCTTGA  524
            ||||||||||||||| |||||
Sbjct  481  CTCACAAATGGATCCACTTGA  501



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26071522293


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5