BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937218

Length=633
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G45540.1 | Symbols:  | RING/U-box protein with C6HC-type zin...   285    3e-76
  AT3G43750.1 | Symbols:  | RING/U-box protein with C6HC-type zin...   147    2e-34


> AT3G45540.1 | Symbols:  | RING/U-box protein with C6HC-type zinc 
finger | chr3:16706312-16707649 REVERSE LENGTH=1047
Length=1047

 Score =  285 bits (154),  Expect = 3e-76
 Identities = 271/328 (83%), Gaps = 6/328 (2%)
 Strand=Plus/Plus

Query  18   TTGATATGCAACGTATAAGTCAACAATTTGCGTCGAGCTTTCGGGTTTTTGTGGCTGGAA  77
            ||||| |||||||||||||  ||  |||   ||| ||||||| | |||| ||||  ||||
Sbjct  134  TTGATGTGCAACGTATAAGAGAAGGATTCAAGTCAAGCTTTCCGATTTTCGTGGAGGGAA  193

Query  78   ATAGTATCAGATATGCTTATATACGAGCAAAGGAAGCAATTGCTTCTGAAATCCGCAT-G  136
            | || || || |||||||||| || ||||| |||| |||| | |||||||||| ||||  
Sbjct  194  AAAGAATTAGTTATGCTTATAAACTAGCAAGGGAAACAATAGTTTCTGAAATCAGCATAT  253

Query  137  CATGTGAAGCCTCCTCACCAAGCC-ATGGCTACTCGCAAGACAACTTGCAGTATTTGTTT  195
            | |||||| ||||||| |||| || | |||||||||||| ||||||||||  || |||||
Sbjct  254  C-TGTGAATCCTCCTCGCCAA-CCTAAGGCTACTCGCAAAACAACTTGCAAAATCTGTTT  311

Query  196  AGATGATGATGTTGACGCTAATCAGATGTTTTGTGTTGATATA-TGTCGTCATCAATTCT  254
            |||||||||| || | |  ||||||||||||||||||| || | |||||||||| ||| |
Sbjct  312  AGATGATGATATTAATGAGAATCAGATGTTTTGTGTTGGTA-AGTGTCGTCATCGATTTT  370

Query  255  GTTTTGAGTGTATGAAACGACATGTAGAGGTGAGGCTACTCGAGGGAAGTGTGATTAGAT  314
            |||  || ||||||| ||||||| |||||||||||||||||||||||||||| || ||||
Sbjct  371  GTTCCGACTGTATGAGACGACATATAGAGGTGAGGCTACTCGAGGGAAGTGTAATGAGAT  430

Query  315  GTCCGCATTACCGCTGCAAGTCTAAGCT  342
            |||| ||||||||||||||| ||| |||
Sbjct  431  GTCCTCATTACCGCTGCAAGACTACGCT  458


> AT3G43750.1 | Symbols:  | RING/U-box protein with C6HC-type zinc 
finger domain | chr3:15646460-15647566 FORWARD LENGTH=1041
Length=1041

 Score =  147 bits (79),  Expect = 2e-34
 Identities = 132/156 (85%), Gaps = 9/156 (6%)
 Strand=Plus/Plus

Query  355  TCCGTGGCATAGTGACTTGTCGTGCGACGATTACAAGAGATTGGGTCCAAATCCTACTAA  414
            ||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||| ||
Sbjct  849  TCCGTGGCATAGTAACTTGTCATGCGATGATTACAAGAGATTGGGTCCAAATCCTACAAA  908

Query  415  TGATGATGATATAAAGTTCAAAGCTTTAGCAAAT-AG-AAATATGTGGCGTCAATGTGGA  472
              |  ||||||||||| | |||| ||| |||||| || ||| | |||| ||||||||| |
Sbjct  909  A-A--ATGATATAAAGCTAAAAGTTTTGGCAAATCAGCAAA-A-GTGGAGTCAATGTGCA  963

Query  473  AAGTGCAAAAACATGATCGAACGT-TCAGAAGGATG  507
            |||||| || ||||||| | |||| || ||||||||
Sbjct  964  AAGTGCCAACACATGATTGCACGTATC-GAAGGATG  998



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30542361376


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5