BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937226
Length=1030
Score E
Sequences producing significant alignments: (Bits) Value
AT3G45540.1 | Symbols: | RING/U-box protein with C6HC-type zin... 420 2e-116
> AT3G45540.1 | Symbols: | RING/U-box protein with C6HC-type zinc
finger | chr3:16706312-16707649 REVERSE LENGTH=1047
Length=1047
Score = 420 bits (227), Expect = 2e-116
Identities = 415/504 (82%), Gaps = 20/504 (4%)
Strand=Plus/Plus
Query 26 ACGTATACGAAAACGATTGGCGTCGATCTTTCCGACTTTT-GGGGTCGGAAATATG-ATC 83
||||||| || || |||| ||| | |||||||| |||| | || ||||| | | ||
Sbjct 144 ACGTATAAGAGAAGGATTCAAGTCAAGCTTTCCGA-TTTTCGTGGAGGGAAA-AAGAATT 201
Query 84 AGATATGCTTATAAACTAGCAAGGGAAGCAATAGTTTCTGATATTAGCAGGCT-TGTGAA 142
|| |||||||||||||||||||||||| ||||||||||||| || |||| | ||||||
Sbjct 202 AGTTATGCTTATAAACTAGCAAGGGAAACAATAGTTTCTGAAATCAGCA-TATCTGTGAA 260
Query 143 TCGTCCTCGCCAAGCC-AAGGCTACCCTCAAAGGGACTTGCAGTATCTGTTTAGATGATG 201
|| |||||||||| || |||||||| | |||| ||||||| ||||||||||||||||
Sbjct 261 TCCTCCTCGCCAA-CCTAAGGCTACTCGCAAAACAACTTGCAAAATCTGTTTAGATGATG 319
Query 202 ATATTAATGCTAATCAGATGTTTTCCATTAATAAATGTCGTCATCAATTCTGTTACGAGT 261
||||||||| ||||||||||||| || ||| |||||||||| ||| |||| ||| |
Sbjct 320 ATATTAATGAGAATCAGATGTTTTGTGTTGGTAAGTGTCGTCATCGATTTTGTTCCGACT 379
Query 262 GTATGAAACGACATATAGAGGTGAGGCTACTCGAGGGGAGTGTGATTAGTTGTCCTCATT 321
|||||| |||||||||||||||||||||||||||||| ||||| || || ||||||||||
Sbjct 380 GTATGAGACGACATATAGAGGTGAGGCTACTCGAGGGAAGTGTAATGAGATGTCCTCATT 439
Query 322 ACAGCTGCAAGTCTAAGCTGAGTTTTGGAAACTGTGTCAATCTTTTGTCACCTAAACTAA 381
|| |||||||| ||| ||| | |||||| |||| | ||||||||| |||||||| |||
Sbjct 440 ACCGCTGCAAGACTACGCTAAAATTTGGAGGCTGTATAAATCTTTTGACACCTAAAATAA 499
Query 382 GAAAGATGTGGCAACAAAGGATCAAAGAGGACTCTATTCC-TGTTAAACAG--AGAATTT 438
|| ||||||||||||||||||| ||||| |||| || ||| ||| || ||| |||||||
Sbjct 500 GAGAGATGTGGCAACAAAGGATTAAAGAAGACT-TAATCCCTGT-AA-CAGGGAGAATTT 556
Query 439 ATTGTCCAAAC-CG-GACGTGCTCCGCTCTAATGTCGGTAAAC-GAGCTCTCTAAATCTA 495
| || |||||| || || ||||| ||| ||||||| | |||| |||||||||| ||| |
Sbjct 557 ACTGCCCAAACTCGCGA--TGCTCGGCTTTAATGTCAG-AAACCGAGCTCTCTATATCAA 613
Query 496 CTAAAGAAGCTGGAGTTAGGAGAT 519
||||||||| || |||||||||||
Sbjct 614 CTAAAGAAGATGAAGTTAGGAGAT 637
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50485317735
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5