BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg937226 Length=1030 Score E Sequences producing significant alignments: (Bits) Value AT3G45540.1 | Symbols: | RING/U-box protein with C6HC-type zin... 420 2e-116 > AT3G45540.1 | Symbols: | RING/U-box protein with C6HC-type zinc finger | chr3:16706312-16707649 REVERSE LENGTH=1047 Length=1047 Score = 420 bits (227), Expect = 2e-116 Identities = 415/504 (82%), Gaps = 20/504 (4%) Strand=Plus/Plus Query 26 ACGTATACGAAAACGATTGGCGTCGATCTTTCCGACTTTT-GGGGTCGGAAATATG-ATC 83 ||||||| || || |||| ||| | |||||||| |||| | || ||||| | | || Sbjct 144 ACGTATAAGAGAAGGATTCAAGTCAAGCTTTCCGA-TTTTCGTGGAGGGAAA-AAGAATT 201 Query 84 AGATATGCTTATAAACTAGCAAGGGAAGCAATAGTTTCTGATATTAGCAGGCT-TGTGAA 142 || |||||||||||||||||||||||| ||||||||||||| || |||| | |||||| Sbjct 202 AGTTATGCTTATAAACTAGCAAGGGAAACAATAGTTTCTGAAATCAGCA-TATCTGTGAA 260 Query 143 TCGTCCTCGCCAAGCC-AAGGCTACCCTCAAAGGGACTTGCAGTATCTGTTTAGATGATG 201 || |||||||||| || |||||||| | |||| ||||||| |||||||||||||||| Sbjct 261 TCCTCCTCGCCAA-CCTAAGGCTACTCGCAAAACAACTTGCAAAATCTGTTTAGATGATG 319 Query 202 ATATTAATGCTAATCAGATGTTTTCCATTAATAAATGTCGTCATCAATTCTGTTACGAGT 261 ||||||||| ||||||||||||| || ||| |||||||||| ||| |||| ||| | Sbjct 320 ATATTAATGAGAATCAGATGTTTTGTGTTGGTAAGTGTCGTCATCGATTTTGTTCCGACT 379 Query 262 GTATGAAACGACATATAGAGGTGAGGCTACTCGAGGGGAGTGTGATTAGTTGTCCTCATT 321 |||||| |||||||||||||||||||||||||||||| ||||| || || |||||||||| Sbjct 380 GTATGAGACGACATATAGAGGTGAGGCTACTCGAGGGAAGTGTAATGAGATGTCCTCATT 439 Query 322 ACAGCTGCAAGTCTAAGCTGAGTTTTGGAAACTGTGTCAATCTTTTGTCACCTAAACTAA 381 || |||||||| ||| ||| | |||||| |||| | ||||||||| |||||||| ||| Sbjct 440 ACCGCTGCAAGACTACGCTAAAATTTGGAGGCTGTATAAATCTTTTGACACCTAAAATAA 499 Query 382 GAAAGATGTGGCAACAAAGGATCAAAGAGGACTCTATTCC-TGTTAAACAG--AGAATTT 438 || ||||||||||||||||||| ||||| |||| || ||| ||| || ||| ||||||| Sbjct 500 GAGAGATGTGGCAACAAAGGATTAAAGAAGACT-TAATCCCTGT-AA-CAGGGAGAATTT 556 Query 439 ATTGTCCAAAC-CG-GACGTGCTCCGCTCTAATGTCGGTAAAC-GAGCTCTCTAAATCTA 495 | || |||||| || || ||||| ||| ||||||| | |||| |||||||||| ||| | Sbjct 557 ACTGCCCAAACTCGCGA--TGCTCGGCTTTAATGTCAG-AAACCGAGCTCTCTATATCAA 613 Query 496 CTAAAGAAGCTGGAGTTAGGAGAT 519 ||||||||| || ||||||||||| Sbjct 614 CTAAAGAAGATGAAGTTAGGAGAT 637 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50485317735 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5