BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937230
Length=724
Score E
Sequences producing significant alignments: (Bits) Value
AT3G45555.1 | Symbols: | RING/U-box protein | chr3:16712368-16... 828 0.0
AT5G37560.1 | Symbols: | RING/U-box superfamily protein | chr5... 91.6 9e-18
> AT3G45555.1 | Symbols: | RING/U-box protein | chr3:16712368-16713009
REVERSE LENGTH=642
Length=642
Score = 828 bits (448), Expect = 0.0
Identities = 548/597 (92%), Gaps = 4/597 (1%)
Strand=Plus/Plus
Query 21 ATGGAAACAAAAGATTGTGAAATCAGCTTACTTGTGGACCCTGAGACTTGTAGGATATGT 80
|||||||||| ||||||||||||||||||||||||||| ||||||||||| || ||||||
Sbjct 1 ATGGAAACAATAGATTGTGAAATCAGCTTACTTGTGGATCCTGAGACTTGCAGTATATGT 60
Query 81 TTCGATGATAATTTCAAAGCTGAGCAGATGTATTATGTTGCTTTATGCAATCATAAATTT 140
||| ||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 TTCAATGATGATTTCAAATCTGAGCAAATGTATTATGTTGCTTTATGCAATCATAAATTC 120
Query 141 TGTTTGGAATGCATGAAACGATTTATAGAAGACAAGCTTCTCGAGGGAACTGTACCGATA 200
|||||||||||||||||||||| |||||||| | |||||| ||||||||||||| ||||
Sbjct 121 TGTTTGGAATGCATGAAACGATATATAGAAGTGAGGCTTCTAGAGGGAACTGTACTGATA 180
Query 201 TGTCCTTATTATCAATGTGAGTCTAAGCTGACTCTTAGAAGTTGTGTTCATTTTTTGACA 260
||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||
Sbjct 181 TGTCCTTATTATCAATGTGAGTCTAAGCTGACTCTTAAAAGTTGTTTTCATATTTTGACA 240
Query 261 TCTAAACTAAAAGCGATGTGGGAACAACGGATTGAAGAGGAATCGGTTCCAGTAACGGAG 320
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 241 TCTAAACTAAAAGCGATGTGGGAACAAAAGATTGAAGAGGAATCCATTCCAGTAACGGAG 300
Query 321 AGATTTTATTGCCCGAACCCGAGGTGCTCGGCTTTAATGTCGAAAACCAAGCTCTCTAAA 380
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 301 AGATTTTATTGCCCGAACCCGAGGTGCTCGGCTTTAATGTCGAAAATCGAGCTCTCTAAA 360
Query 381 TTTA--TTGAAGAAGATGGATCTATGAGATGCTTCCAATGCGGGGAGCGCTTTTGCATGA 438
| || || ||||||||||| | |||||||||||||||||||||||||||||||||| |
Sbjct 361 TCTACCTT--AGAAGATGGATTTGTGAGATGCTTCCAATGCGGGGAGCGCTTTTGCATTA 418
Query 439 ACTGCAAAGTTTTGTGGCATAGTAGTTTGTCGTGTGACGATTACAAGGTTTTGGGTAATA 498
|||||||||||| ||||| |||| ||||| |||||| ||| |||| ||||||||||
Sbjct 419 ACTGCAAAGTTTCATGGCAAAGTAACTTGTCATGTGACAATTGCAAGAAATTGGGTAATA 478
Query 499 ATCCTACATCAGATGATAAGATGCTAAAAGTTCTTGCAAATGAGAATCTGTGGCGTCAAT 558
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 479 ATCCTACATCAGATGATAAGATGCTAAAAGTTCTTGCAAATGAGAAAAAGTGGCGCCAAT 538
Query 559 GTGAAAAGTGCCAACACATGATCGAACTTTCGGAAGGATGCATCCATGTAACTTGCA 615
|||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 539 GTGAAAAGTGCCAACATATGATCAAACTTTCGGAAGGATGCATCCATGTAACTTGCA 595
> AT5G37560.1 | Symbols: | RING/U-box superfamily protein | chr5:14921986-14923790
FORWARD LENGTH=1335
Length=1335
Score = 91.6 bits (49), Expect = 9e-18
Identities = 110/139 (79%), Gaps = 6/139 (4%)
Strand=Plus/Plus
Query 511 ATGATAAGATGCTAAAAGTTCTTGCAAATGA-GAATCTGTGGCGTCAATGTGAAAAGTGC 569
|||| | |||||| || ||||| ||||| || || |||||||||||||| ||||
Sbjct 980 ATGACATGATGCTTAAGGTTCTGGCAAACGACCAA-ATGTGGCGTCAATGTTCCGAGTG- 1037
Query 570 CAA-CACATGATCGAACTTTCGGAAGGATGC-ATCCATGTAACTTGCAGATGTGGATATG 627
|| |||||||| ||||| | || || ||| || || |||||||||||||||||||||
Sbjct 1038 TAAGCACATGATTGAACTGACTGAGGGTTGCAAT-CACATAACTTGCAGATGTGGATATG 1096
Query 628 AGTTTTGTTACACATGTGG 646
||||||| |||| ||||||
Sbjct 1097 AGTTTTGCTACAGATGTGG 1115
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35113668753
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5