BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937235
Length=899
Score E
Sequences producing significant alignments: (Bits) Value
AT3G45600.1 | Symbols: TET3 | tetraspanin3 | chr3:16733755-1673... 1426 0.0
> AT3G45600.1 | Symbols: TET3 | tetraspanin3 | chr3:16733755-16735951
REVERSE LENGTH=1173
Length=1173
Score = 1426 bits (772), Expect = 0.0
Identities = 846/883 (96%), Gaps = 0/883 (0%)
Strand=Plus/Plus
Query 16 AAGCTATGAGATCAAGCAACCATCTCATAGGTTTAGTCAACTTCCTCACTTTCCTCCTCT 75
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 93 AAGCTATGAGAACAAGCAACCATCTCATAGGTTTAGTCAACTTCCTCACTTTCCTCCTCT 152
Query 76 CAATCCCAATCCTCGGCGGTGGAATATGGTTAAGCAGCCGAGCAAACTCCACCGACTGTT 135
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 153 CAATACCAATCCTCGGCGGTGGAATATGGTTAAGCAGCCGAGCTAACTCCACCGACTGTT 212
Query 136 TAAGATTCCTCCAGTGGCCTCTCATCGTCATCGGAATCTCAATCATGGTCGTATCTTTAG 195
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 213 TAAGATTCCTTCAATGGCCTCTCATCGTCATCGGAATCTCAATCATGGTCGTATCTTTAG 272
Query 196 CAGGATTCGCTGGAGCTTGTTACCGTAACAAGTTCCTTATGTGGCTATACCTAGTTGCCA 255
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 273 CTGGATTCGCTGGAGCTTGTTACCGTAACAAGTTCCTTATGTGGCTATACCTAGTAGTCA 332
Query 256 TGCTTCTTATCATCGCCGCTCTCATCGGTTTCATCATCTTCGCTTACGCGGTTACCGATA 315
||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 333 TGCTTCTCATCATCGCTGCTCTTATCGGTTTCATCATCTTCGCTTACGCGGTTACAGATA 392
Query 316 AAGGATCCGGTCGAACCGTGCTTAACCGGGGTTATCTTGACTATTATCTTCAAGATTACT 375
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 393 AAGGATCCGGTCGAACCGTACTTAACCGGGGTTATCTTGACTATTATCTTGAAGATTACT 452
Query 376 CTGGTTGGTTGAAAGATCGAGTCTCTGATGATAGTTATTGGGGTAAAATAAGTTCTTGTC 435
|||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||
Sbjct 453 CTGGTTGGTTGAAAGATCGAGTTTCTGATGATAGCTATTGGGGTAAAATTAGTTCTTGTC 512
Query 436 TTAGAGATTCTGGTGCTTGTAGGAAGATTGGAAGGAATTTTAATGGTGTCCCTGAAACTG 495
|||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||
Sbjct 513 TTAGAGATTCTGGTGCTTGTAGAAAGATTGGAAGAAATTTTAATGGTGTACCTGAAACTG 572
Query 496 CTGATATGTTCTTCCTTAGAAGACTTAGCCCTGTTGAGTCCGGTTGTTGCAAGCCACCAA 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 573 CTGATATGTTCTTCCTTAGAAGACTTAGCCCTGTTGAGTCCGGTTGTTGCAAGCCACCAA 632
Query 556 CAGATTGTGGTTTTTCATATGTCAATGAGACCGGATGGGACACGAGAGGAGGGATGATAG 615
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 633 CAGATTGCGGTTTTTCATATGTGAATGAGACCGGATGGGACACGAGAGGAGGGATGATAG 692
Query 616 GACCGAACCAGGACTGTATGGTGTGGAGCAATGACCAGAGCATGCTCTGTTATCAGTGTA 675
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 693 GACCGAACCAGGACTGTATGGTGTGGAGCAACGACCAGAGCATGCTCTGTTATCAGTGTA 752
Query 676 GTTCTTGTAAAGCTGGTGTTCTTGGGAGCTTGAAGAAGAGCTGGAGAAAAGTATCGGTGA 735
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 753 GTTCTTGTAAAGCTGGTGTTCTTGGGAGTTTGAAGAAGAGTTGGAGAAAAGTATCGGTGA 812
Query 736 TTAACATCGTGGTACTTATCATTCTCGTTATCTTCTATGTTATCGCTTATGCTGCTTATA 795
| ||||| ||||||||||||||||| |||||||| || |||||||||||||| |||||||
Sbjct 813 TCAACATTGTGGTACTTATCATTCTAGTTATCTTTTACGTTATCGCTTATGCAGCTTATA 872
Query 796 GGAATGTCAAGAGGATTGATAACGATGAGCCGGCTGGTGAAGCTAGGATGACAAAATCAC 855
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 873 GGAATGTCAAGAGGATCGATAACGATGAACCGGCTGGTGAAGCTAGGATGACAAAATCAC 932
Query 856 AACCTAGTCATTTCCACCTTTGATCAAAATTTGGTATAGTTCA 898
| |||||||||||||| ||||||||||||||||| | ||||||
Sbjct 933 ATCCTAGTCATTTCCATCTTTGATCAAAATTTGGAACAGTTCA 975
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43904644478
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5