BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937238
Length=1488
Score E
Sequences producing significant alignments: (Bits) Value
AT3G45620.2 | Symbols: | Transducin/WD40 repeat-like superfami... 2109 0.0
> AT3G45620.2 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr3:16745882-16748156 FORWARD LENGTH=1747
Length=1747
Score = 2109 bits (1142), Expect = 0.0
Identities = 1283/1352 (95%), Gaps = 6/1352 (0%)
Strand=Plus/Plus
Query 140 GGGATAGTGAAGAAACTCGATCTTTACGGGAAGTTAAATGGTCACGAGGGGTGTGTGAAT 199
|||| |||||||||||| |||||||||||||||||||||||||| ||||| |||||||||
Sbjct 256 GGGAGAGTGAAGAAACTAGATCTTTACGGGAAGTTAAATGGTCATGAGGGATGTGTGAAT 315
Query 200 GCCGTGGAGTTCAATTCGAGTGGCGATGTTCTTGTTTCGGGGTCCGATGATCGACAAATC 259
|| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 316 GCAGTGGAGTTCAATTCGACTGGCGATGTTCTTGTTTCCGGGTCCGATGATCGACAAATC 375
Query 260 ATGCTCTGGAACTGGTTGAGTGGAAGCAGGACA-TTGTCGTATCCCTCTGGACATTGTGA 318
||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||
Sbjct 376 ATGCTCTGGAACTGGTTGAGTGGAAGCAGGA-AGTTGTCGTATCCCTCTGGCCATTGTGA 434
Query 319 AAATGTGTTTCAGACTAAGTTCATACCTTTTACGGATGACCGGACAATCATAACATCTGG 378
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 435 AAATGTGTTTCAGACTAAGTTCATACCTTTTACGGATGACAGGACAATCATAACATCTGG 494
Query 379 TGCTGATGGACAAGTAAGACTTGGTCAGATCCTAGAAAATGGTAAAGTGGAGACAAAAAG 438
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 495 TGCTGATGGACAAGTAAGACTTGGTCAGATCCTAGAAAATGGTAAAGTGGAGACGAAAAG 554
Query 439 ACTAGGGAGGCATCACGGTCGCGTGTACAAGCTTGCTGTATTGCCTGGAGATCCTAATGT 498
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 555 ACTAGGGAGGCATCACGGTCGCGTGTACAAGCTTGCTGTTTTGCCTGGAGATCCTAACGT 614
Query 499 ATTCTACAGCTGTGGTGAAGATGGGTTTGTTCAACATTTTGATATACGAAGCAATAGTGC 558
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||
Sbjct 615 ATTCTACAGCTGTGGTGAAGATGGTTTTGTTCAACATTTTGATATACGCAGCAACAGTGC 674
Query 559 CACTATGGTTTTGTATTCCTCTCCGTTCACACAAGGCTGCAGGAGACATCACTCCAGCAG 618
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 675 TACTATGGTTTTGTATTCCTCTCCGTTCACACAAGGATGCAGGAGACATCACTCCAGCAG 734
Query 619 TAGGATAAGATTGAATTCTATTGCGATAGATCCGAGGAATTCATATTATCTTGCAGTTGG 678
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 735 TAGGATCAGATTGAATTCTATTGCGATAGATCCGAGGAATTCATATTATCTTGCGGTTGG 794
Query 679 GGGTTCTGATGAATATGCACGAGTCTATGACACTAGAAGAGGACAATTAGCTCCAGTATG 738
||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||
Sbjct 795 GGGTTCTGATGAATATGCACGAGTCTACGATACTAGAAGAGTACAATTAGCTCCAGTATG 854
Query 739 TCGCCATGTGTTACCAGATGCGCCTGTGAACACTTTCTGTCCTCGTCATCTCCGGGAAAC 798
|||||| || |||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 855 TCGCCACGTCTTACCAGACGCTCCTGTGAACACTTTCTGTCCTCGTCATCTCCGGGAAAC 914
Query 799 CAACAGTGTTCACGTCACAGGTTTGGCATATTCCAAAGCTGGAGAACTGCTGGTCTCTTA 858
||||||||||||| |||| || || ||||||||||||||||||||||| ||||||||||
Sbjct 915 CAACAGTGTTCACATCACGGGATTAGCATATTCCAAAGCTGGAGAACTATTGGTCTCTTA 974
Query 859 CAACGACGAGCTCATTTATCTGTTTGAGAAGAACATGGGTTATGGTCCGTCGCCGGTTTC 918
|||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 975 CAACGACGAGCTTATTTATCTGTTTGAGAAGAACATGGGTTATGGTTCGTCGCCTGTTTC 1034
Query 919 TATCTCTCCTGAGAAACTGCAAGTAATGGAAGAACCACAGGTGTATACAGGTCACCGCAA 978
| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1035 TGTCTCTCCTGAGAAACTGCAAGAAATGGAAGAACCACAGGTGTATATAGGTCACCGCAA 1094
Query 979 TGCACAAACAGTGAAGGGAGTGAAATT-TTTCGGTCCAAATGATGAATATGTGACGAGTG 1037
||||||||||||||| |||||||| || ||| |||||||||||||||||||| |||||||
Sbjct 1095 TGCACAAACAGTGAAAGGAGTGAACTTCTTT-GGTCCAAATGATGAATATGTCACGAGTG 1153
Query 1038 GTTCAGACTGCGGTCACATCTTTATATGGAAGAAGAAAGGGGGTAAGCTTGTTCGGGCTA 1097
||||||||||||||||||| |||||||||||||||||||| ||||||||||| || ||||
Sbjct 1154 GTTCAGACTGCGGTCACATTTTTATATGGAAGAAGAAAGGAGGTAAGCTTGTCCGAGCTA 1213
Query 1098 TGGTGGGTGATAGACGAGTGGTGAATCAGCTAGAGTCTCACCCACACATACCGTTACTTG 1157
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1214 TGGTGGGTGATAGACGAGTGGTGAATCAGTTAGAGTCTCACCCACACATACCGTTACTTG 1273
Query 1158 CATCTTGCGGGATTGAAAAGAGCGTTAAGCTCTGGACGCCTATGTCAAACGAAGTTCTTT 1217
|||| ||||||||||||||||||||||||||||||||||| |||||||| || |||||||
Sbjct 1274 CATCCTGCGGGATTGAAAAGAGCGTTAAGCTCTGGACGCCAATGTCAAATGATGTTCTTT 1333
Query 1218 CCCTGCCTGAAAAGATCGAAAAGGTGATGGAATTGAACAGGGTGGGGAGAGAAGACCAGT 1277
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1334 CCCTGCCTGAAAAGATCGATAAGGTGATGGAATTGAACAGGGTGGGGAGAGAAGACCAAT 1393
Query 1278 CGAGGGTGACACTGACTCCTGATGTAATTATGCATGTTCTCCGGCTACAGAGACGTCAGA 1337
||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1394 CGAGGGTAACACTGACTCCTGATGTAATTATGCATGTTCTTAGGCTACAGAGACGTCAGA 1453
Query 1338 CGTCGGCTTTCACAGAGAGAAGATACGTTTCAACTGATATTGGCAGTGATGAAGGAAATG 1397
|||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1454 CGTCGGCTTTTACAGAGAGGAGATACGTTTCAACTGACATTGGCAGTGATGAAGGAAATG 1513
Query 1398 ACGCTCACTTCATTGCAAGCTTAGTAGCCAACGACGATGAGTCTTCAGAAAGAGAATGTA 1457
| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1514 ATGCTCGCTTCATTGCAAGCTTAGTAGCCAACGACGATGAGTCTTCAGACAGAGAATGTA 1573
Query 1458 CGGTAAGCTGAGTC-T-TAAACTAGTGTAATA 1487
| |||||||||||| | | |||||||||||||
Sbjct 1574 CTGTAAGCTGAGTCCTCTCAACTAGTGTAATA 1605
Score = 241 bits (130), Expect = 2e-62
Identities = 137/140 (98%), Gaps = 2/140 (1%)
Strand=Plus/Plus
Query 1 GTAAAGACTTTGAACTT-AAACAATGGCGAGACCGAGACGAAGAAACACAGAGATCGGTG 59
|||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 15 GTAAAGAC-TTGAACTTAAAACCATGGCGAGACCGAGACGAAGAAACACAGAGATCGGTG 73
Query 60 ATGGCTTCACAGAGATATTCAACAGAGAGATTGGTTTCTCTCATCCAATCACCATCTCTC 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 74 ATGGCTTCACAGAGATATTCAACAGAGAGATTGGTTTCTCTCATCCAATCACCATCTCTC 133
Query 120 GTCGAATCTCCGCTTCTGAG 139
||||||||||||||||||||
Sbjct 134 GTCGAATCTCCGCTTCTGAG 153
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73393196790
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5