BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937247

Length=441
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G45700.1 | Symbols:  | Major facilitator superfamily protein...   357    5e-98
  AT3G45710.1 | Symbols:  | Major facilitator superfamily protein...   124    5e-28


> AT3G45700.1 | Symbols:  | Major facilitator superfamily protein 
| chr3:16778713-16781198 FORWARD LENGTH=1829
Length=1829

 Score =  357 bits (193),  Expect = 5e-98
 Identities = 249/276 (90%), Gaps = 4/276 (1%)
 Strand=Plus/Plus

Query  128   GCCGTCTCATGTCAGTGATATGGCTGTTTCCTGCTCTCGTGA-TAGTTGGGATAGGCGAG  186
             ||| ||||||||||||| |||||||| ||||||||||||||| ||  ||| ||||| |||
Sbjct  1323  GCCATCTCATGTCAGTGCTATGGCTGGTTCCTGCTCTCGTGATTA-ATGGAATAGGTGAG  1381

Query  187   GCCTTTCATTTTCCCA-CGAGTATTGCAATATTCTATGGAGAATTCCCTGAGTCCCTGAG  245
             |||||||||||| ||| | | ||||||||||||||||||||||||||||||||| || ||
Sbjct  1382  GCCTTTCATTTT-CCAGCAAATATTGCAATATTCTATGGAGAATTCCCTGAGTCTCTAAG  1440

Query  246   GAATACTGCGACTTCATTGACCTCGTTGGTGATGGGAATCTCTTTCTATCTGTGCACTGC  305
             ||| || |||||||||||||||||| |||||||||||||||||||||||||| |||| ||
Sbjct  1441  GAACACAGCGACTTCATTGACCTCGGTGGTGATGGGAATCTCTTTCTATCTGAGCACAGC  1500

Query  306   TCTTATTGATCTGATCCAGAGAACCACCAAGTGGTTACCAAATGACATAAACCACGGAAG  365
             |||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  1501  TCTTATCGATGTGATCCAGAGGACCACCAAGTGGTTACCAAATGACATAAACCACGGAAG  1560

Query  366   AGTTGACAATGTCTACTGGGTTTTAGTCATTTTAGG  401
              ||||||||||| |||| ||| ||||||||| ||||
Sbjct  1561  GGTTGACAATGTTTACTTGGTATTAGTCATTATAGG  1596


 Score = 84.2 bits (45),  Expect = 9e-16
 Identities = 93/114 (82%), Gaps = 12/114 (11%)
 Strand=Plus/Plus

Query  4    TTCCTCTTATTCTCTGCCATGGCTGATTCAAACTTTAGTGACAAAGAAGCGCATTACTCT  63
            |||| ||| ||||||||||||||| ||||| ||| | |||||||||||||||   | || 
Sbjct  35   TTCCACTTGTTCTCTGCCATGGCTAATTCAGACTCTGGTGACAAAGAAGCGC---A-TC-  89

Query  64   AGCGATCCAAGTAGAAAGCGTGGTGGCTGGATCACTTTACCGTTCATGCTTGTT  117
             ||  | |   ||| |||| |||||||||||||||||||||||||||||| |||
Sbjct  90   -GC--T-C---TAGCAAGCATGGTGGCTGGATCACTTTACCGTTCATGCTCGTT  136


> AT3G45710.1 | Symbols:  | Major facilitator superfamily protein 
| chr3:16782643-16784735 FORWARD LENGTH=1877
Length=1877

 Score =  124 bits (67),  Expect = 5e-28
 Identities = 102/118 (86%), Gaps = 5/118 (4%)
 Strand=Plus/Plus

Query  4    TTCCTCTTATTCTCTGCCATGGCTGATTCAAACTTTAGTGACA---AAGAAGCGCATTAC  60
            ||| |||| |||||| |||||||||||||||| | | ||||||   ||| |||||||  |
Sbjct  59   TTCATCTTGTTCTCTACCATGGCTGATTCAAAATCTGGTGACACGGAAGTAGCGCATCGC  118

Query  61   TCTAGCGATCCAAGTAG-AAAGCGTGGTGGCTGGATCACTTTACCGTTCATGCTTGTT  117
            ||||||||||||||  | |||||||||||||||||||||||||||||||||||| |||
Sbjct  119  TCTAGCGATCCAAG-CGAAAAGCGTGGTGGCTGGATCACTTTACCGTTCATGCTAGTT  175



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20961651333


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5