BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937268
Length=1298
Score E
Sequences producing significant alignments: (Bits) Value
AT3G45670.1 | Symbols: | Protein kinase superfamily protein | ... 1267 0.0
AT4G04632.1 | Symbols: | Protein kinase superfamily protein | ... 351 7e-96
> AT3G45670.1 | Symbols: | Protein kinase superfamily protein
| chr3:16765320-16766459 FORWARD LENGTH=1140
Length=1140
Score = 1267 bits (686), Expect = 0.0
Identities = 995/1143 (87%), Gaps = 25/1143 (2%)
Strand=Plus/Plus
Query 143 TGAGATTTCTGATTCATCGTCAAGCAACAACTCCATGATCCCTCCTCTTCCTCAAAACCC 202
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 15 TGAGATTTCTGATTCATCGTCAAGCAACAACTCGATGATCCCTCCTCTTCCTCAAAACCC 74
Query 203 TATTTTCACTGTAAAACTCTCTCCGATCATGCTCCATCTACGTCGTTGTTCGAGGAAGAT 262
|||||| ||||| ||||||||||||||||| |||||| |||| ||||| |||| ||| ||
Sbjct 75 TATTTTGACTGTGAAACTCTCTCCGATCATTCTCCATGTACGACGTTGCTCGAAGAACAT 134
Query 263 TAAAAAGAAGAAACTTACACAGCCGCTTTTgaagaagaagaagaagaagaagaagaGTAT 322
|||||||||||||| ||||| | ||| ||| |||||||||||||||||||||
Sbjct 135 TAAAAAGAAGAAACGTACACGGACGCCTTT---------GAAGAAGAAGAAGAAGAGTAT 185
Query 323 TAGTAGCAGTGTCAAATTTCTAAGCAGAGGATCATTCAACGCCGCCGT-TCAGAAACGTT 381
||||||||||||| ||| | ||| | ||| |||||||| ||||| | |||||||| ||
Sbjct 186 TAGTAGCAGTGTCGAATCTATAATCGGAGTCTCATTCAAATCCGCC-TCTCAGAAACATT 244
Query 382 CCACCACCGTAACCCGCAACGGAGGAGTGAGAAAGGTTTCCTCTTGGGTGAAATCTAGGT 441
||||||||||||| ||| |||||||||| | |||| ||||||||||||||||||||||||
Sbjct 245 CCACCACCGTAACTCGCGACGGAGGAGTTAAAAAGATTTCCTCTTGGGTGAAATCTAGGT 304
Query 442 TACTTGGGGAAGGGGGTTACGCTTCG-GTTTACCTAGCGACGAGTAAAGACGACAGATAC 500
||||||| ||||||| ||||| || | |||||||||||||| |||||||| |||| ||||
Sbjct 305 TACTTGGAGAAGGGGCTTACGGTT-GTGTTTACCTAGCGACAAGTAAAGATGACATATAC 363
Query 501 AAAACAGAGAGAGCCATCAAAAGTGCAGA-GCTTTCAAAGGCTTCGAGTCTTATGCACGA 559
|||||||||||||| ||||||||||| || | ||| |||||||| |||||||||||||||
Sbjct 364 AAAACAGAGAGAGCGATCAAAAGTGCTGATG-TTTTAAAGGCTTGGAGTCTTATGCACGA 422
Query 560 AGGAAGGATCCTAA-AACGTTTACAATCTCCGTTCGTGATTAGTTGCTACGGCGATGAGA 618
|||||||||| ||| || |||| |||||||||||||||||| |||| |||||| |||| |
Sbjct 423 AGGAAGGATCTTAAGAA-GTTTGCAATCTCCGTTCGTGATTCGTTGTTACGGCCATGAAA 481
Query 619 TTGCACGAGAAGGGACTGGTCATGAATATAACTTAG-TTCTCGAGTATTG-TGCTGGACA 676
||||||||||||||||||||||| ||||||| || | |||||||||| || | |||||||
Sbjct 482 TTGCACGAGAAGGGACTGGTCATCAATATAA-TTTGATTCTCGAGTACTGCT-CTGGACA 539
Query 677 GTGTCTTGTGGATTTGATCGAAGATAATCACGGAGGGTTGTCGGAGTTTGATGTGAAGCA 736
|||||||| |||| |||||||||||||||| |||||| | ||||||||||||| |||||
Sbjct 540 GTGTCTTGCGGATATGATCGAAGATAATCAAGGAGGGATACCGGAGTTTGATGTCAAGCA 599
Query 737 GTTCTCTAGAGATGTTCTGTCTGGTCTCAGTTACATTCACAGCAGAAACATTGTTCATTG 796
|||| ||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 600 GTTCGCTATAGATGTTCTGTCTGGTCTCAGTTACATTCACCGCAGAAACATTATTCATTG 659
Query 797 TGACATTAAACCAGACAATCTCTTACTCAGCCCTGTTGATCACCGGTTTAGGTTTAATGG 856
||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 660 TGAAATTAAACCGGACAATCTCTTACTCAGCCCTGTTGATCACCGGTTTAGGTCTAATGG 719
Query 857 GTATCTGATTAAA-ATTGCAGATTTTGGTTTATCAATGGAGAAAGGTTCGGTGGAGTATG 915
|| | ||| ||| ||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 720 GTTTTTGAC-AAAGATTGCAGATTTCGGTTTATCAATGGAGAAAGGTTCTAAAGAGTATG 778
Query 916 GGAATGGATGTGGTCATATGAGAGGGACAACTAGGTACATGGCTCCGGAATTAATAGGCC 975
| || ||| |||| || |||||||||||||||||||||||||||||||| |||||||||
Sbjct 779 GAAACGGACGTGGGCACATGAGAGGGACAACTAGGTACATGGCTCCGGAGTTAATAGGCG 838
Query 976 ATGGGGTTGTTGATTTTGGTGTTGACATTTGGGCGTTTGGATGTTCTGTTTTGGAGATGC 1035
|||| || | ||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 839 GTGGGCTTCTGGATTTTGCTGTTGACATTTGCGCGTTTGGATGTTCTGTTTTGGAGATGC 898
Query 1036 TAACCGGGCAAATGGTTTGGGGAGAGCATGGTGATTTGGTTTTTGATGATTGGGTTAAGC 1095
|||||||| ||| |||||||||||| |||||||||||| | ||||||||||||| |
Sbjct 899 TAACCGGGAAAAGGGTTTGGGGAGAATATGGTGATTTGGCTCATGATGATTGGGTTGATT 958
Query 1096 TCATCGGTCACACTGATCTCATTCCTCGTATATCGAGTCGGTTATCGGAAGAAGCTCAGG 1155
| |||||||||| |||||||| ||||| || |||| ||||||||| | ||||||||| |
Sbjct 959 TGATCGGTCACAGTGATCTCACTCCTCAAATCTCGATTCGGTTATCTGCAGAAGCTCAAG 1018
Query 1156 ATTTTTTGAGGAGATGCTTTG-TTAAGGAGCCTGGTTCAAGATGGAGGATCAATGAACTC 1214
| ||| ||| ||| || |||| |||||||||||||||| || |||| ||| |||||||
Sbjct 1019 ACTTTCTGATGAGGTG-TTTGGTTAAGGAGCCTGGTTCGAGGTGGACCATCGGTGAACTC 1077
Query 1215 ATGAACCATCCGTTTCTCTATTCGGATGTGGATTTTTCTCATAACGGTTTTGTTTATGAC 1274
|| ||||||||||||||| ||| |||| || |||||||| || || |||||||||||
Sbjct 1078 GTGGACCATCCGTTTCTCTGTTCAGATGAAGAGTTTTCTCACAATGGATTTGTTTATGAT 1137
Query 1275 TGA 1277
|||
Sbjct 1138 TGA 1140
> AT4G04632.1 | Symbols: | Protein kinase superfamily protein
| chr4:2339586-2340049 REVERSE LENGTH=464
Length=464
Score = 351 bits (190), Expect = 7e-96
Identities = 294/345 (85%), Gaps = 4/345 (1%)
Strand=Plus/Plus
Query 954 ATGGCTCCGGAATTAATAGGCCATGGGGTTGTTGATTTTGGTGTTGACATTTGGGCGTTT 1013
||||||||||| ||||||||| |||| |||| ||||||| |||||||||||||||||||
Sbjct 1 ATGGCTCCGGAGTTAATAGGCGGTGGGCTTGTGGATTTTGCTGTTGACATTTGGGCGTTT 60
Query 1014 GGATGTTCTGTTTTGGAGATGCTAACCGGGCAAATGGTTTGGGGAGAGCATGGTGATTTG 1073
|||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||
Sbjct 61 GGATGTTCTGTTTTGGAGATGCTAACAGGGAAAACGGTTTGGGGAGAGCATGGTGATTTG 120
Query 1074 GTTTTTGATGATTGGGTTAAGCTCATCGGTCACACTGATCTCATTCCTCGTATATCGAGT 1133
||| ||||||||||||| | | || ||||| | |||||||| ||||| || |||| |
Sbjct 121 GTTCATGATGATTGGGTTGATTTAATTGGTCATAGTGATCTCACTCCTCAAATCTCGACT 180
Query 1134 CGGTTATCGGAAGAAGCTCAGGATTTTTTGAGGAGATGCTTTG-TTAAGGAGCCTGGTTC 1192
|||||||| | ||||||||| || ||| | | ||| || |||| ||||||||||||||||
Sbjct 181 CGGTTATCTGCAGAAGCTCAAGACTTTCTAATGAGGTG-TTTGGTTAAGGAGCCTGGTTC 239
Query 1193 AAGATGGAGGATCAATGAACTCATGAACCATCCGTTTCTCTATTCGGATGTGGATTTTTC 1252
|| ||||| ||| ||||||| || |||||| |||||| | ||||||||| || |||||
Sbjct 240 GAGGTGGAGCATCGGTGAACTCGTGGACCATCTGTTTCTTTGTTCGGATGTAGAGTTTTC 299
Query 1253 TCATAACGGTTTTGTTTATGACTGAGTTTGATTTAAG-TTGAGTT 1296
||| || |||||||||||||| |||||||| |||| | |||||||
Sbjct 300 TCACAATGGTTTTGTTTATGATTGAGTTTG-TTTATGATTGAGTT 343
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63855093240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5