BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937275

Length=598
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G06150.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   353    9e-97


> AT3G06150.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G19060.1); 
Has 61 Blast hits to 59 proteins in 10 species: Archae - 0; 
Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 58; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:1861797-1864116 
REVERSE LENGTH=2188
Length=2188

 Score =  353 bits (191),  Expect = 9e-97
 Identities = 223/238 (94%), Gaps = 4/238 (2%)
 Strand=Plus/Plus

Query  210  ATGCCGGAGAAAGGAATGATTTTGCCTCCGGTACCGAGCCAATTGGTGCTTTTACGGCCA  269
            ||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||
Sbjct  230  ATGCCGGAGAAAGGAATGATTTTCCCGCCGGTACCGAGCCAATTGGTGATTTTACGGCCA  289

Query  270  AACCCT-TTGCTTCAATGGCGGCTTGGTGCTCTTACAGCACTCGTCTTCTTCCTCATGTT  328
            | |||| || ||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct  290  AGCCCTCTT-CTTCAATGGCGGCTTGGTGCTCTTACAGCACTCGTCTGCTTCCTTATGTT  348

Query  329  AGTCGTTTGGAGTATTGACGGTTGTTCGATTCAAAGCTTCGTTGAGCCATGGAGATTCAA  388
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  349  AGTCGTTTGGAGTATTGACGGTTGTTCGATTCAAAGCTTCGTTCAGCCATGGAGATTCAA  408

Query  389  TGCATACTCTGTTCGAATCAGTCCTTTTCCGTCGCC-TTTAATGTTACCGAAACCCAA  445
            ||| |||||||||||||||||||||| ||||||||| |||| ||| | ||||||||||
Sbjct  409  TGCTTACTCTGTTCGAATCAGTCCTTCTCCGTCGCCGTTTA-TGTCAACGAAACCCAA  465


 Score =  187 bits (101),  Expect = 9e-47
 Identities = 120/129 (93%), Gaps = 2/129 (2%)
 Strand=Plus/Plus

Query  21   ATGCTGGAGAAAGGAATGATTTTGCCTCCGGTACCGAGCCAATTGGTGCTTTTACGGCCA  80
            |||| |||||||||||||||||| || ||||||||||||||||||||| |||||||||||
Sbjct  230  ATGCCGGAGAAAGGAATGATTTTCCCGCCGGTACCGAGCCAATTGGTGATTTTACGGCCA  289

Query  81   AACCCT-TTGCTTCAATGGCGGCTTGGTGCTCTTACAGCACTCGTCTTCTTCCTCATGTT  139
            | |||| || ||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct  290  AGCCCTCTT-CTTCAATGGCGGCTTGGTGCTCTTACAGCACTCGTCTGCTTCCTTATGTT  348

Query  140  AGTCGTTTG  148
            |||||||||
Sbjct  349  AGTCGTTTG  357



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28784166231


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5