BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937278
Length=1882
Score E
Sequences producing significant alignments: (Bits) Value
AT3G45890.1 | Symbols: RUS1 | Protein of unknown function, DUF6... 2867 0.0
> AT3G45890.1 | Symbols: RUS1 | Protein of unknown function, DUF647
| chr3:16871681-16874311 FORWARD LENGTH=2054
Length=2054
Score = 2867 bits (1552), Expect = 0.0
Identities = 1782/1888 (94%), Gaps = 35/1888 (2%)
Strand=Plus/Plus
Query 5 GAAGAGGAAGAAGAAGATGAGTTGTTCTTATCTGA-TTTCTGGTGACGGTTCCGTCGTAG 63
||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||| |
Sbjct 1 GAAGAGGAAGAAGAAGATGAGTTGTTCTTATCT-ACTTTCTGGTGACGCTTCCGTCGTCG 59
Query 64 CTTCACGGCGGTGGAGTGATGTTTCTTCCCGGCAGCGTTTATTTCTTCCACGGCAATTAC 123
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 60 CTTCACGGCGGTGGAGTGATGTTTCTTCCCGGCAGCGTTTATTTCTCCCACGGCAATCAC 119
Query 124 TCCGGCAGCCACCACTTTCTTCGCTTACCCGATGCGTCCGATTAGTCGCTAATGTGAATG 183
||||||||||| | ||||||| || |||||||||||||||||||||||||||| ||||
Sbjct 120 TCCGGCAGCCATCGGGTTCTTCGTTTTCCCGATGCGTCCGATTAGTCGCTAATGTAAATG 179
Query 184 ATAACTTCAGTAAACAATCA-TACGCGACGAGAAATTGTTTTGCTTCAGTGTTTAGTAG- 241
|| | ||||||||||||||| | ||||||||||||||| || ||||||||||||||| |
Sbjct 180 ATCATTTCAGTAAACAATCACT-CGCGACGAGAAATTGCTTGGCTTCAGTGTTTAGT-GC 237
Query 242 AGACGTCGGCGGAAGTAACGGCAATAACGACAACGGAAATGACGGCGGTGATGGTGGAGA 301
|||| | || ||||||||||| ||||| || ||||||||| ||| | | |||
Sbjct 238 AGACTTGGGTGGAAGTAACGGTAATAATGATAACGGAAAT---GGC-G-G-CGGT----- 286
Query 302 CGGCGGTTGGTGGTTTAACGGCGGCGGCGATAACTCTGATGACTCTTCTTTCAG-TTTGA 360
||||| || | ||||||||||||||||||||||||| ||||||||| | |||||
Sbjct 287 -GGCGG-AGG-AG----ACGGCGGCGGCGATAACTCTGATGATTCTTCTTTC-GATTTGA 338
Query 361 GATACCTCTGCTTTCTTGTATTGGGATTGTCTTGCTTCTTCCATTTCCGATTATCAGCTG 420
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 339 GATACCTCTGCTTTCTTTTATTGGGCTTGTCTTGCTTCTTCCATTTCCGATTATCAGCTG 398
Query 421 CTTCCGCCATAGCTAAAGCTTC-AGATTCGGATAGTAGTGAAGATAATGAGAAAGAGACG 479
| |||||||||||||||| || | |||||||||||| || |||| || ||||||||||
Sbjct 399 CGTCCGCCATAGCTAAAG-ATCAAAATTCGGATAGTAATGGAGATGCTGTGAAAGAGACG 457
Query 480 GTTTGGGAAGTGAGAGGAAGTAAAAGGAAGAGACTAGTTCCTGATTTCGTCAAAGATGAG 539
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 458 GTTTGGGAAGTGAGAGGAAGTAAAAGGAAGAGACTAGTTCCCGATTTTGTCAAAGATGAG 517
Query 540 TTCGTCTCTGAAGAATATGCTTTTGAATTATCATCTTCTCTAACTCCTGAGAATCTCCTA 599
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 518 TTCGTCTCTGAAGAATCTGCTTTTGAATTATCATCTTCTCTAACTCCTGAGAATCTCCTA 577
Query 600 GCTCAATGTAGAAACCTTCTCACTCAATTCCTTCTTCCTGAAGG-TTTCCCGAATAGTGT 658
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 578 GCTCAATGTAGAAACCTTCTCACTCAATTCCTTCTTCCTGAAGGTTTTCCC-AATAGTGT 636
Query 659 AACTTCCGATTACCTCGATTACTCTCTCTGGAGAGGTGTTCAAGGAATTGCTAGTCAAGT 718
|||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 637 AACTTCTGATTACCTCGATTACTCTCTCTGGAGAGGTGTTCAAGGTATTGCTAGTCAAAT 696
Query 719 CAGCGGCGTTCTTGCCACTCAGTCTTTGCTTTATGCAGTTGGGTTAGGTAAAGGAGCAAT 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 CAGCGGCGTTCTTGCCACTCAGTCTTTGCTTTATGCAGTTGGGTTAGGTAAAGGAGCAAT 756
Query 779 TCCTACAGCTGCAGCTATCAATTGGGTGCTTAAAGATGGAATTGGGTATCTTAGTAAGAT 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 757 TCCTACAGCTGCAGCTATCAATTGGGTGCTTAAAGATGGAATTGGGTATCTTAGTAAGAT 816
Query 839 AATGTTGTCGAAATACGGACGTCATTTCGATGTTCATCCCAAAGGATGGAGGCTATTTGC 898
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 817 AATGTTGTCGAAATACGGACGACATTTCGATGTTCATCCCAAAGGATGGAGGCTATTTGC 876
Query 899 TGATCTACTTGAAAACGCTGCTTTTGGTATGGAGATG-TTGACACCGGTCTTCCCTCAGT 957
|||||| |||||||||||||||||||||||||||||| || || || |||||||||||||
Sbjct 877 TGATCTTCTTGAAAACGCTGCTTTTGGTATGGAGATGCTT-ACGCCAGTCTTCCCTCAGT 935
Query 958 TTTTCGTTATGATCGGTGCTGCTGCTGGTGCTGGTCGATCTGCTGCTGCATTGATTCAGG 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 936 TTTTCGTTATGATCGGTGCTGCTGCTGGTGCTGGTCGATCTGCTGCTGCATTGATTCAGG 995
Query 1018 CTGCTACTAGAAGTTGCTTCAATGCTGGCTTTGCTTCTCAAAGGAACTTTGCTGAGGTAA 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 996 CTGCTACTAGAAGTTGCTTCAATGCTGGCTTTGCTTCTCAAAGGAACTTTGCTGAGGTAA 1055
Query 1078 TTGCCAAAGGTGAAGCTCAAGGAATGGTGAGCAAGTCAGTGGGTATCCTGCTCGGAATAG 1137
||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1056 TTGCCAAGGGTGAAGCTCAAGGAATGGTGAGCAAGTCAGTGGGTATTCTGCTAGGAATAG 1115
Query 1138 TGGTTGCCAATTGCATAGGAACCTCTACAAGTCTTGCCCTTGCTGCATTTGGAGTTGTGA 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1116 TGGTTGCCAATTGCATAGGAACCTCTACAAGTCTTGCCCTTGCTGCATTTGGAGTTGTGA 1175
Query 1198 CAACAATCCATATGTATACCAATCTCAAATCTTACCAATGTATCCAACTCCGGACTCTAA 1257
| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1176 CTACAATCCATATGTATACCAATCTCAAATCTTACCAGTGTATCCAGCTCCGGACTCTAA 1235
Query 1258 ACCCATACCGTGCAAGTTTGGTTTTTAGTGAATATCTCATCAGTGGCCAAGCTCCTCTAA 1317
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1236 ACCCATACCGTGCAAGTTTGGTTTTTAGTGAATATCTAATCAGCGGCCAAGCTCCTCTAA 1295
Query 1318 TCAAGGAGGTCAACGATGAAGAACCGCTCTTCCCAACAGTTCGGTTTTTAAACATGAAAT 1377
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1296 TCAAGGAGGTCAACGATGAAGAACCGCTCTTCCCAACAGTTCGGTTTTCAAACATGAAAT 1355
Query 1378 CTCCAGAAAAGCTGCAAGATTTTGTCTTATCATCAGAAGCGAAAGCAGCAGCCGCAGACA 1437
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1356 CTCCAGAAAAGCTGCAAGATTTTGTCTTATCATCAGAAGCAAAAGCAGCAGCCGCAGACA 1415
Query 1438 TAGAGGAACGGCTTCAACTAGGGTCAAAGCTCAGCGATGTTATCCACAACAAGGAAGAAG 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1416 TAGAGGAACGGCTTCAACTAGGGTCAAAGCTCAGCGATGTTATCCACAACAAGGAAGAAG 1475
Query 1498 CAATAGCACTGTTTGATCTGTATCGCAATGAAGGCTACATCCTTACAGAACACAGAGGAA 1557
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 1476 CAATAGCACTGTTTGATCTATATCGCAATGAAGGCTACATCCTTACAGAACACAAAGGAA 1535
Query 1558 GATTCTGCGTGATGCTCAAGGAAAGCTCAACTCCACAAGACATGCTCAGGTCGTTGTTTC 1617
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1536 GATTCTGCGTGATGCTCAAGGAAAGCTCAACTCCACAAGACATGCTCAGGTCATTGTTTC 1595
Query 1618 AAGTGAACTACCTCTACTGGCTAGAGAAGAATGCTGGGATCGAACCTGCAAGCACTTACA 1677
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1596 AAGTGAACTACCTCTACTGGCTAGAGAAGAATGCTGGGATCGAACCCGCAAGCACTTACT 1655
Query 1678 CAGACTGCAAACCGGGCGGTCGGCTTCACATTTCTTTAGATTATGTGCGACGAGAGTTTG 1737
||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1656 CAGACTGCAAACCCGGTGGTCGCCTTCACATTTCTTTAGATTATGTGCGACGAGAGTTTG 1715
Query 1738 AACACGCCAAAGAAGACAGTGAATCAGTGGGTTGGGTCACTGAAGGACTGATAGCTAGGC 1797
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
Sbjct 1716 AACACGCCAAAGAAGACAGCGAATCAGTAGGTTGGGTCACTGAAGGACTGATAGCTAGAC 1775
Query 1798 CTCTACCAACCAGAATCCGTCTAGGTCATGATCGTGAACCATTAT---CTTCTCCTTCCA 1854
||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||
Sbjct 1776 CTCTACCAACCAGAATCCGTCTAGGTCATGATCGTGAACTATTATTATCTTCTCCAAACA 1835
Query 1855 GCTCATAAACTCAGAGCAAAACCAGGGC 1882
|||||||||||||||||||||||| |||
Sbjct 1836 GCTCATAAACTCAGAGCAAAACCATGGC 1863
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93172211520
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5