BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg937284 Length=1148 Score E Sequences producing significant alignments: (Bits) Value AT3G45950.1 | Symbols: | Pre-mRNA splicing Prp18-interacting f... 1428 0.0 AT4G37120.1 | Symbols: SMP2 | Pre-mRNA splicing Prp18-interacti... 599 2e-170 AT1G65660.1 | Symbols: SMP1 | Pre-mRNA splicing Prp18-interacti... 549 2e-155 > AT3G45950.1 | Symbols: | Pre-mRNA splicing Prp18-interacting factor | chr3:16889461-16890618 REVERSE LENGTH=1158 Length=1158 Score = 1428 bits (773), Expect = 0.0 Identities = 977/1072 (91%), Gaps = 28/1072 (3%) Strand=Plus/Plus Query 21 ATGGCGACGGCTTCAGTTGCTTTTAAGTCTAGGGAAGATCGTAGGAAGCAAAAAGAATTA 80 ||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||| Sbjct 1 ATGGCGACGGCTTCAGTTGCTTTTAAGTCTAGGAAAGATCATAGGAAGCAAAAGGAATTA 60 Query 81 GACGAAGCTAGAAAAGCCGGGCTTGTTCCGGCTGAGGTAGACGAGAATGGAAAGGAAATC 140 || |||||| | ||||||||||||| ||||||||||||||||||| ||||||||||||| Sbjct 61 GAGGAAGCTCGTAAAGCCGGGCTTGCTCCGGCTGAGGTAGACGAGGGTGGAAAGGAAATC 120 Query 141 AATCCTCACATAGCTAAGTATTTG-TTATCTCCTCCATTCTATGCCAAGTCTGAAAAACC 199 |||| ||||||| ||||||||||| || ||||||||| |||||||||||||||||||| Sbjct 121 AATCTTCACATACCTAAGTATTTGACAAT-TCCTCCATTATATGCCAAGTCTGAAAAACC 179 Query 200 GAGTTTGAAGCATCAAAAGAATTGGAAAACTAAACCCGTTTCCACAAAAGCATATTATGA 259 ||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||| Sbjct 180 GAGCTTGAAGCATCAAAAGAATTGGAAAACTAAACCCGTTTCCACAACATCATATTATGA 239 Query 260 CAGAGGTGCAAAGACTTATCAAGCCGAAAAATATCGCAAAGGAGCGTGTCAAAACTGTGG 319 | |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 240 CCGAGGTGCAAAGACTTATCAAGCCGAAAAGTATCGGAAAGGAGCGTGTCAAAACTGTGG 299 Query 320 TGCAATGACACATGATATGAAAACATGTATAGAAAGACCTCGTAAGGTTGGTGCAAAATA 379 ||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||| Sbjct 300 TGCAATGACGCATGATGTGAAAACATGTATGGAAAGACCTCGTAAGGTTGGTGCAAAATA 359 Query 380 CACAAACAAGAACATTGCACCTGATGAGAAAATTGAGAGTCTTGAATTTGATTATGATGG 439 |||| |||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 360 CACAGACAAAAACATTGCACCTGATGAGAAAATCGAGAGTCTTGAATTTGACTATGATGG 419 Query 440 TAAGAGAGACCGATGGAATGGTTATGATCCTTCGTCTTATCGTCATGTGAGAGATCTTTA 499 || || ||||||||||||||||||||||||||||||||| ||||||||||||||| | | Sbjct 420 CAAAAGGGACCGATGGAATGGTTATGATCCTTCGTCTTATTGTCATGTGAGAGATCGTCA 479 Query 500 TGAAGCAAAAGAGAATGCACGAGAGAATTACTTGAAGGAGCAACAACTTAA--G--AAAC 555 ||||||||||||||||||||||||||| ||| |||| ||||||||||| || | |||| Sbjct 480 TGAAGCAAAAGAGAATGCACGAGAGAAGTACCTGAACGAGCAACAACT-AATTGCGAAAC 538 Query 556 TAGAGGATAATGATGCAACCAGTGATGGAGAGGAAGAAGACTTAAGGGTTGATGA-G--A 612 ||||||| || || | | | ||||||||||||||||||||||||||||||||| | | Sbjct 539 TAGAGGAGAA-GA---A-C-ATTGATGGAGAGGAAGAAGACTTAAGGGTTGATGAAGCCA 592 Query 613 -GC---A--AG--CA-G--G-TGGATTTTGCAAAGGTTAAAAAACGTGTACGAACAACTG 660 | | || || | | |||||||||||||||||||||||||||| |||||||||| Sbjct 593 AGATTGATGAGAGCATGCAGGTGGATTTTGCAAAGGTTAAAAAACGTGTTCGAACAACTG 652 Query 661 ATGGTGGAAGCACAGGAACTGTAAGGAATCTGCGTATTAGAGAAGATACTGCAAAATACT 720 |||||||||||| |||||||||||||||| ||||||| ||||||||| |||||||||||| Sbjct 653 ATGGTGGAAGCAAAGGAACTGTAAGGAATTTGCGTATCAGAGAAGATCCTGCAAAATACT 712 Query 721 TGTTGAACCTTGATGTTAACTCAGCTTATTATGACCCTAAATCTCGATCCATGCGTGAAG 780 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 713 TGTTGAACCTTGATGTTAACTCAGCTTATTATGATCCTAAATCTCGATCCATGCGTGAAG 772 Query 781 ATCCGCTCCCAGATGCAAATCCAAATGAGAAATTTTGTTTGGGAGATAATCAATATAGAA 840 ||||||||||| || || ||||||||||||||||||||||| |||||||||||||||||| Sbjct 773 ATCCGCTCCCATATACAGATCCAAATGAGAAATTTTGTTTGAGAGATAATCAATATAGAA 832 Query 841 ACAGTGGCCAAGCTCTAGAGTTCAAACAACTAAACATGTATTCATGTGAAGCATTTGGCA 900 ||||||| |||||| ||||||||||||| | ||||||||||||||||||||| |||| || Sbjct 833 ACAGTGGTCAAGCTATAGAGTTCAAACAGCAAAACATGTATTCATGTGAAGCGTTTGACA 892 Query 901 AAGGACAAGACATACATATGCAAGCGGCTCCATCTCAAGCTGAGTTGTGTTATAAGAGGG 960 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 893 AAGGACAGGACATACATATGCAAGCGGCTCCATCTCAAGCTGAGTTGTGTTATAAGAGGG 952 Query 961 TTAAGGTTACAAAGGAAAAACTGAATAATCAGATAAAAGACACAATCATGGCAAAGTATG 1020 ||||| || ||||||||||||||||| ||||| ||| ||| ||||||| |||||||||| Sbjct 953 TTAAGATTGCAAAGGAAAAACTGAATTCTCAGAGAAAGGACGCAATCATTGCAAAGTATG 1012 Query 1021 GGAATGCAGCTGCAAAAGATGATATTCCGATGGAGCTTTTGCTTGGGCAAAG 1072 || ||||||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 1013 GGGATGCAGCTGCAAAAGATGACATTCCGATGGAGCTTTTGCTTGGACAAAG 1064 > AT4G37120.1 | Symbols: SMP2 | Pre-mRNA splicing Prp18-interacting factor | chr4:17486647-17489294 FORWARD LENGTH=1814 Length=1814 Score = 599 bits (324), Expect = 2e-170 Identities = 460/525 (88%), Gaps = 12/525 (2%) Strand=Plus/Plus Query 598 TAAGGGTTGATGAGAGCAAGCAGGTGGATTTTGCAAAGGTTAAAAAACGTGTACGAACAA 657 ||| |||||||||||| | ||| ||||||||||||||||| | |||||||| ||||||| Sbjct 653 TAA-GGTTGATGAGAGTAGGCAAATGGATTTTGCAAAGGTTGAGAAACGTGTTCGAACAA 711 Query 658 CTGATGGTGGAAGCACAGGAACTGTAAGGAATCTGCGTATTAGAGAAGATACTGCAAAAT 717 ||| |||||| |||||||||||||| |||||||||||||| |||||||| ||||| |||| Sbjct 712 CTGGTGGTGGTAGCACAGGAACTGTTAGGAATCTGCGTATCAGAGAAGACACTGCTAAAT 771 Query 718 ACTTGTTGAACCTTGATGTTAACTCAGCTTATTATGACCCTAAATCTCGATCCATGCGTG 777 || ||||||| |||||||| ||||||||| |||||||||||||| |||| |||||||||| Sbjct 772 ACCTGTTGAATCTTGATGTAAACTCAGCTCATTATGACCCTAAAACTCGGTCCATGCGTG 831 Query 778 AAGATCCGCTCCCAGATGCAAATCCAAATGAGAAATTTTGTTTGGGAGATAATCAATATA 837 ||||||| || ||||||||| |||||||||| ||||| | |||||||||||||||||||| Sbjct 832 AAGATCCACTTCCAGATGCAGATCCAAATGAAAAATTCTATTTGGGAGATAATCAATATA 891 Query 838 GAAACAGTGGCCAAGCTCTAGAGTTCAAACA-ACTAAACATGTATTCATGTGAAGCATTT 896 ||||||||||||||||||| ||||||||||| | ||||||| ||||||||||||||||| Sbjct 892 GAAACAGTGGCCAAGCTCTGGAGTTCAAACAGA-TAAACATCCATTCATGTGAAGCATTT 950 Query 897 GGCAAAGGACAAGACATACATATGCAAGCGGCTCCATCTCAAGCTGAGTTG-TGTTATAA 955 | ||| ||||| ||||| |||||||||||||||||||| |||||||| ||| | | |||| Sbjct 951 GACAAGGGACATGACATGCATATGCAAGCGGCTCCATCCCAAGCTGAATTGCTCT-ATAA 1009 Query 956 GAGGGTTAAGGTTACAAAGGAAAAACTGAATAA-TCAGATAAAAGACACAATCATGGCAA 1014 || |||| ||| |||||||||||||||| || ||||| ||| ||||| || |||| || Sbjct 1010 GAACTTTAAAGTTGCAAAGGAAAAACTGAA-AACTCAGACAAAGGACACCATTATGGAAA 1068 Query 1015 AGTATGGGAATGCAGCTGCAAAAGATGATATTCCGATGGAGCTTTTGCTTGGGCAAAGCG 1074 ||||||||||||||||| || ||| ||| ||||||||||||||||||||||| ||||| | Sbjct 1069 AGTATGGGAATGCAGCTACAGAAGGTGAAATTCCGATGGAGCTTTTGCTTGGCCAAAGTG 1128 Query 1075 AAAGACAAGTTGAGTATGATCGAGCAGGCAGG-AGGATTATAAAG 1118 |||||||| |||||||||| | || |||||| |||||||| ||| Sbjct 1129 AAAGACAAATTGAGTATGA-C-AG--GGCAGGGAGGATTATGAAG 1169 Score = 486 bits (263), Expect = 2e-136 Identities = 461/554 (83%), Gaps = 24/554 (4%) Strand=Plus/Plus Query 21 ATGGCGACGGCTTCAGTTGCTTTTAAGTCTAGGGAAGATCGTAGGAAGCAAAA-AGAATT 79 |||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||| Sbjct 33 ATGGCGACGGCTTCAGTTGCTTTTAAGTCTAGGGAAGATCACAGGAAG-AAATTAGAATT 91 Query 80 AGACGAAGCTAGAAAAGCCGGGCTTGTTCCGGCTGAGGTAGACGA-GAATGG-AAAGGAA 137 ||| |||||| | ||||| || || | ||| |||||||||||||| || ||| |||| || Sbjct 92 AGAGGAAGCTCGTAAAGCTGGTCTCGCTCCTGCTGAGGTAGACGAAGA-TGGCAAAG-AA 149 Query 138 ATCAATCCTCACATAGCTAAGTATTTGTTATCTCCTCCATTCTATGC-CAAGTCTGAAAA 196 ||||||||||||||| || ||||| ||| | |||||| ||| | |||||||||| | Sbjct 150 ATCAATCCTCACATACCTGAGTATATGTCAAAAGCTCCATGGTAT-CTCAAGTCTGAACA 208 Query 197 ACCGAGTTTGAAGCATCAAAAGAATTGGAAAACTAAACCCGTTTCCACAAAAGCATAT-- 254 |||||||||||||||||||| |||||||||| | |||||| ||| ||||| |||| Sbjct 209 GCCGAGTTTGAAGCATCAAAAAAATTGGAAAATTGAACCCGAACCCA-AAAAG-ATATGG 266 Query 255 TATGACAGAGGTGCAAAGA-CTTATCAAGCCGAAAAATATCGCAAAGGAGCGTGTCA-AA 312 ||||| |||||| ||||| || ||||||| ||| |||| ||||| ||||||||| | || Sbjct 267 TATGATAGAGGTAAAAAGATCT-ATCAAGCTGAACAATACCGCAAGGGAGCGTGT-ATAA 324 Query 313 ACTGTGGTGCAATGAC--ACATGATATGAAAACATGTATAGAAAGACCTCGTAAGGTTGG 370 |||||||||||||||| ||| | | | ||| ||||||| || |||||||||||| |||| Sbjct 325 ACTGTGGTGCAATGACTCACA-GTTCT-AAAGCATGTATGGATAGACCTCGTAAGATTGG 382 Query 371 TGCAAAATACACAAACAAGAACATTGCACCTGATGAGAAAATTGAGAGTCTTGAATTTGA 430 || ||||||||||||| ||||||||| ||||||||||||| |||||| ||||| |||| Sbjct 383 AGCTAAATACACAAACATGAACATTGCTGCTGATGAGAAAATCGAGAGTTTTGAACTTGA 442 Query 431 TTATGATGGTAAGAGAGACCGATGGAATGGTTATGATCCTTCGTCTTATCGTCATGTGAG 490 |||||||| ||||| ||| ||||||| ||||||||| |||| | || ||||||||| | Sbjct 443 CTATGATGGGAAGAGGGACAGATGGAACGGTTATGATACTTCAACCTACCGTCATGTG-G 501 Query 491 -AGATCTTTATGAAGCAAAAGAGAATGCACGAGAGAATTA-CTTGAAGGAGCAACAACTT 548 ||||| |||||| || |||||| | |||||| |||| || || |||||||| |||||| Sbjct 502 TAGATCGTTATGATGCTAAAGAGGAGGCACGAAAGAAGTATCTC-AAGGAGCAGCAACTT 560 Query 549 AAGAAACTAGAGGA 562 |||||||||||||| Sbjct 561 AAGAAACTAGAGGA 574 > AT1G65660.1 | Symbols: SMP1 | Pre-mRNA splicing Prp18-interacting factor | chr1:24418107-24421292 REVERSE LENGTH=1857 Length=1857 Score = 549 bits (297), Expect = 2e-155 Identities = 470/554 (85%), Gaps = 10/554 (2%) Strand=Plus/Plus Query 14 TATAACAATGGCGACGGCTTCAGTTGCTTTTAAGTCTAGGGAAGATCGTAGGAAGCAAAA 73 ||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 55 TATAATAATGGCGACGGCTTCAGTTGCTTTTAAGTCTAGGGAAGACCATAGGAAGCAAAT 114 Query 74 AGAATTAGACGAAGCTAGAAAAGCCGGGCTTGTTCCGGCTGAGGTAGACGAGAATGGAAA 133 |||||||| |||||| | ||||||||||||| ||| |||||||| || ||| ||||||| Sbjct 115 TGAATTAGAGGAAGCTCGTAAAGCCGGGCTTGCTCCAGCTGAGGTTGATGAGGATGGAAA 174 Query 134 GGAAATCAATCCTCACATAGCTAAGTATTTGTTATCTCCTCCATTCTATGCC-AAGTCTG 192 |||||| |||||||| || | ||||| ||| |||| |||||| ||| | || |||| Sbjct 175 GGAAATTAATCCTCATATTCCGCAGTATATGTCATCTGCTCCATGGTAT-CTTAATTCTG 233 Query 193 AAAAACCGAGTTTGAAGCATCAAAAGAATTGGAAAACTAAACCCGTTTCCACAAAAG-CA 251 |||||||||||||||||||||||| ||| ||||| | | | ||| || ||| || | | Sbjct 234 AAAAACCGAGTTTGAAGCATCAAAGGAAATGGAAGAGTGATCCCAATTACACTAA-GTCG 292 Query 252 TATTATGACAGAGGTGCAAAGA-CTTATCAAGCCGAAAAATATCGCAAAGGAGCGTGTCA 310 | ||||| ||||||||||||| ||| |||||| |||||||| ||||| ||||||||||| Sbjct 293 TGGTATGATAGAGGTGCAAAGATCTT-TCAAGCTGAAAAATACCGCAAGGGAGCGTGTCA 351 Query 311 AAACTGTGGTGCAATGACACATGATATGA-AAA-CATGTATAGAAAGACCTCGTAAGGTT 368 |||||||||||||||||| ||| | || ||| | ||||| || || ||||||||| || Sbjct 352 AAACTGTGGTGCAATGACGCAT-AC-TGCTAAAGCTTGTATGGATAGGCCTCGTAAGATT 409 Query 369 GGTGCAAAATACACAAACAAGAACATTGCACCTGATGAGAAAATTGAGAGTCTTGAATTT 428 || || || |||||||||| ||||||||||||||||||||||||||| ||| ||||| || Sbjct 410 GGGGCGAAGTACACAAACATGAACATTGCACCTGATGAGAAAATTGAAAGTTTTGAACTT 469 Query 429 GATTATGATGGTAAGAGAGACCGATGGAATGGTTATGATCCTTCGTCTTATCGTCATGTG 488 || || ||||| ||||| ||| ||||||||||||||||||||||| | || | || |||| Sbjct 470 GACTACGATGGCAAGAGGGACAGATGGAATGGTTATGATCCTTCGACCTACCATCGTGTG 529 Query 489 AGAGATCTTTATGAAGCAAAAGAGAATGCACGAGAGAATTACTTGAAGGAGCAACAACTT 548 | |||||||||||||||||||||| |||||||| |||| |||||||||||||| |||||| Sbjct 530 ATAGATCTTTATGAAGCAAAAGAGGATGCACGAAAGAAGTACTTGAAGGAGCAGCAACTT 589 Query 549 AAGAAACTAGAGGA 562 |||||||| ||||| Sbjct 590 AAGAAACTTGAGGA 603 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56325011490 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5