BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937284
Length=1148
Score E
Sequences producing significant alignments: (Bits) Value
AT3G45950.1 | Symbols: | Pre-mRNA splicing Prp18-interacting f... 1428 0.0
AT4G37120.1 | Symbols: SMP2 | Pre-mRNA splicing Prp18-interacti... 599 2e-170
AT1G65660.1 | Symbols: SMP1 | Pre-mRNA splicing Prp18-interacti... 549 2e-155
> AT3G45950.1 | Symbols: | Pre-mRNA splicing Prp18-interacting
factor | chr3:16889461-16890618 REVERSE LENGTH=1158
Length=1158
Score = 1428 bits (773), Expect = 0.0
Identities = 977/1072 (91%), Gaps = 28/1072 (3%)
Strand=Plus/Plus
Query 21 ATGGCGACGGCTTCAGTTGCTTTTAAGTCTAGGGAAGATCGTAGGAAGCAAAAAGAATTA 80
||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||
Sbjct 1 ATGGCGACGGCTTCAGTTGCTTTTAAGTCTAGGAAAGATCATAGGAAGCAAAAGGAATTA 60
Query 81 GACGAAGCTAGAAAAGCCGGGCTTGTTCCGGCTGAGGTAGACGAGAATGGAAAGGAAATC 140
|| |||||| | ||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 61 GAGGAAGCTCGTAAAGCCGGGCTTGCTCCGGCTGAGGTAGACGAGGGTGGAAAGGAAATC 120
Query 141 AATCCTCACATAGCTAAGTATTTG-TTATCTCCTCCATTCTATGCCAAGTCTGAAAAACC 199
|||| ||||||| ||||||||||| || ||||||||| ||||||||||||||||||||
Sbjct 121 AATCTTCACATACCTAAGTATTTGACAAT-TCCTCCATTATATGCCAAGTCTGAAAAACC 179
Query 200 GAGTTTGAAGCATCAAAAGAATTGGAAAACTAAACCCGTTTCCACAAAAGCATATTATGA 259
||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 180 GAGCTTGAAGCATCAAAAGAATTGGAAAACTAAACCCGTTTCCACAACATCATATTATGA 239
Query 260 CAGAGGTGCAAAGACTTATCAAGCCGAAAAATATCGCAAAGGAGCGTGTCAAAACTGTGG 319
| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 240 CCGAGGTGCAAAGACTTATCAAGCCGAAAAGTATCGGAAAGGAGCGTGTCAAAACTGTGG 299
Query 320 TGCAATGACACATGATATGAAAACATGTATAGAAAGACCTCGTAAGGTTGGTGCAAAATA 379
||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 300 TGCAATGACGCATGATGTGAAAACATGTATGGAAAGACCTCGTAAGGTTGGTGCAAAATA 359
Query 380 CACAAACAAGAACATTGCACCTGATGAGAAAATTGAGAGTCTTGAATTTGATTATGATGG 439
|||| |||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 360 CACAGACAAAAACATTGCACCTGATGAGAAAATCGAGAGTCTTGAATTTGACTATGATGG 419
Query 440 TAAGAGAGACCGATGGAATGGTTATGATCCTTCGTCTTATCGTCATGTGAGAGATCTTTA 499
|| || ||||||||||||||||||||||||||||||||| ||||||||||||||| | |
Sbjct 420 CAAAAGGGACCGATGGAATGGTTATGATCCTTCGTCTTATTGTCATGTGAGAGATCGTCA 479
Query 500 TGAAGCAAAAGAGAATGCACGAGAGAATTACTTGAAGGAGCAACAACTTAA--G--AAAC 555
||||||||||||||||||||||||||| ||| |||| ||||||||||| || | ||||
Sbjct 480 TGAAGCAAAAGAGAATGCACGAGAGAAGTACCTGAACGAGCAACAACT-AATTGCGAAAC 538
Query 556 TAGAGGATAATGATGCAACCAGTGATGGAGAGGAAGAAGACTTAAGGGTTGATGA-G--A 612
||||||| || || | | | ||||||||||||||||||||||||||||||||| | |
Sbjct 539 TAGAGGAGAA-GA---A-C-ATTGATGGAGAGGAAGAAGACTTAAGGGTTGATGAAGCCA 592
Query 613 -GC---A--AG--CA-G--G-TGGATTTTGCAAAGGTTAAAAAACGTGTACGAACAACTG 660
| | || || | | |||||||||||||||||||||||||||| ||||||||||
Sbjct 593 AGATTGATGAGAGCATGCAGGTGGATTTTGCAAAGGTTAAAAAACGTGTTCGAACAACTG 652
Query 661 ATGGTGGAAGCACAGGAACTGTAAGGAATCTGCGTATTAGAGAAGATACTGCAAAATACT 720
|||||||||||| |||||||||||||||| ||||||| ||||||||| ||||||||||||
Sbjct 653 ATGGTGGAAGCAAAGGAACTGTAAGGAATTTGCGTATCAGAGAAGATCCTGCAAAATACT 712
Query 721 TGTTGAACCTTGATGTTAACTCAGCTTATTATGACCCTAAATCTCGATCCATGCGTGAAG 780
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 713 TGTTGAACCTTGATGTTAACTCAGCTTATTATGATCCTAAATCTCGATCCATGCGTGAAG 772
Query 781 ATCCGCTCCCAGATGCAAATCCAAATGAGAAATTTTGTTTGGGAGATAATCAATATAGAA 840
||||||||||| || || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 773 ATCCGCTCCCATATACAGATCCAAATGAGAAATTTTGTTTGAGAGATAATCAATATAGAA 832
Query 841 ACAGTGGCCAAGCTCTAGAGTTCAAACAACTAAACATGTATTCATGTGAAGCATTTGGCA 900
||||||| |||||| ||||||||||||| | ||||||||||||||||||||| |||| ||
Sbjct 833 ACAGTGGTCAAGCTATAGAGTTCAAACAGCAAAACATGTATTCATGTGAAGCGTTTGACA 892
Query 901 AAGGACAAGACATACATATGCAAGCGGCTCCATCTCAAGCTGAGTTGTGTTATAAGAGGG 960
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 AAGGACAGGACATACATATGCAAGCGGCTCCATCTCAAGCTGAGTTGTGTTATAAGAGGG 952
Query 961 TTAAGGTTACAAAGGAAAAACTGAATAATCAGATAAAAGACACAATCATGGCAAAGTATG 1020
||||| || ||||||||||||||||| ||||| ||| ||| ||||||| ||||||||||
Sbjct 953 TTAAGATTGCAAAGGAAAAACTGAATTCTCAGAGAAAGGACGCAATCATTGCAAAGTATG 1012
Query 1021 GGAATGCAGCTGCAAAAGATGATATTCCGATGGAGCTTTTGCTTGGGCAAAG 1072
|| ||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1013 GGGATGCAGCTGCAAAAGATGACATTCCGATGGAGCTTTTGCTTGGACAAAG 1064
> AT4G37120.1 | Symbols: SMP2 | Pre-mRNA splicing Prp18-interacting
factor | chr4:17486647-17489294 FORWARD LENGTH=1814
Length=1814
Score = 599 bits (324), Expect = 2e-170
Identities = 460/525 (88%), Gaps = 12/525 (2%)
Strand=Plus/Plus
Query 598 TAAGGGTTGATGAGAGCAAGCAGGTGGATTTTGCAAAGGTTAAAAAACGTGTACGAACAA 657
||| |||||||||||| | ||| ||||||||||||||||| | |||||||| |||||||
Sbjct 653 TAA-GGTTGATGAGAGTAGGCAAATGGATTTTGCAAAGGTTGAGAAACGTGTTCGAACAA 711
Query 658 CTGATGGTGGAAGCACAGGAACTGTAAGGAATCTGCGTATTAGAGAAGATACTGCAAAAT 717
||| |||||| |||||||||||||| |||||||||||||| |||||||| ||||| ||||
Sbjct 712 CTGGTGGTGGTAGCACAGGAACTGTTAGGAATCTGCGTATCAGAGAAGACACTGCTAAAT 771
Query 718 ACTTGTTGAACCTTGATGTTAACTCAGCTTATTATGACCCTAAATCTCGATCCATGCGTG 777
|| ||||||| |||||||| ||||||||| |||||||||||||| |||| ||||||||||
Sbjct 772 ACCTGTTGAATCTTGATGTAAACTCAGCTCATTATGACCCTAAAACTCGGTCCATGCGTG 831
Query 778 AAGATCCGCTCCCAGATGCAAATCCAAATGAGAAATTTTGTTTGGGAGATAATCAATATA 837
||||||| || ||||||||| |||||||||| ||||| | ||||||||||||||||||||
Sbjct 832 AAGATCCACTTCCAGATGCAGATCCAAATGAAAAATTCTATTTGGGAGATAATCAATATA 891
Query 838 GAAACAGTGGCCAAGCTCTAGAGTTCAAACA-ACTAAACATGTATTCATGTGAAGCATTT 896
||||||||||||||||||| ||||||||||| | ||||||| |||||||||||||||||
Sbjct 892 GAAACAGTGGCCAAGCTCTGGAGTTCAAACAGA-TAAACATCCATTCATGTGAAGCATTT 950
Query 897 GGCAAAGGACAAGACATACATATGCAAGCGGCTCCATCTCAAGCTGAGTTG-TGTTATAA 955
| ||| ||||| ||||| |||||||||||||||||||| |||||||| ||| | | ||||
Sbjct 951 GACAAGGGACATGACATGCATATGCAAGCGGCTCCATCCCAAGCTGAATTGCTCT-ATAA 1009
Query 956 GAGGGTTAAGGTTACAAAGGAAAAACTGAATAA-TCAGATAAAAGACACAATCATGGCAA 1014
|| |||| ||| |||||||||||||||| || ||||| ||| ||||| || |||| ||
Sbjct 1010 GAACTTTAAAGTTGCAAAGGAAAAACTGAA-AACTCAGACAAAGGACACCATTATGGAAA 1068
Query 1015 AGTATGGGAATGCAGCTGCAAAAGATGATATTCCGATGGAGCTTTTGCTTGGGCAAAGCG 1074
||||||||||||||||| || ||| ||| ||||||||||||||||||||||| ||||| |
Sbjct 1069 AGTATGGGAATGCAGCTACAGAAGGTGAAATTCCGATGGAGCTTTTGCTTGGCCAAAGTG 1128
Query 1075 AAAGACAAGTTGAGTATGATCGAGCAGGCAGG-AGGATTATAAAG 1118
|||||||| |||||||||| | || |||||| |||||||| |||
Sbjct 1129 AAAGACAAATTGAGTATGA-C-AG--GGCAGGGAGGATTATGAAG 1169
Score = 486 bits (263), Expect = 2e-136
Identities = 461/554 (83%), Gaps = 24/554 (4%)
Strand=Plus/Plus
Query 21 ATGGCGACGGCTTCAGTTGCTTTTAAGTCTAGGGAAGATCGTAGGAAGCAAAA-AGAATT 79
|||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||
Sbjct 33 ATGGCGACGGCTTCAGTTGCTTTTAAGTCTAGGGAAGATCACAGGAAG-AAATTAGAATT 91
Query 80 AGACGAAGCTAGAAAAGCCGGGCTTGTTCCGGCTGAGGTAGACGA-GAATGG-AAAGGAA 137
||| |||||| | ||||| || || | ||| |||||||||||||| || ||| |||| ||
Sbjct 92 AGAGGAAGCTCGTAAAGCTGGTCTCGCTCCTGCTGAGGTAGACGAAGA-TGGCAAAG-AA 149
Query 138 ATCAATCCTCACATAGCTAAGTATTTGTTATCTCCTCCATTCTATGC-CAAGTCTGAAAA 196
||||||||||||||| || ||||| ||| | |||||| ||| | |||||||||| |
Sbjct 150 ATCAATCCTCACATACCTGAGTATATGTCAAAAGCTCCATGGTAT-CTCAAGTCTGAACA 208
Query 197 ACCGAGTTTGAAGCATCAAAAGAATTGGAAAACTAAACCCGTTTCCACAAAAGCATAT-- 254
|||||||||||||||||||| |||||||||| | |||||| ||| ||||| ||||
Sbjct 209 GCCGAGTTTGAAGCATCAAAAAAATTGGAAAATTGAACCCGAACCCA-AAAAG-ATATGG 266
Query 255 TATGACAGAGGTGCAAAGA-CTTATCAAGCCGAAAAATATCGCAAAGGAGCGTGTCA-AA 312
||||| |||||| ||||| || ||||||| ||| |||| ||||| ||||||||| | ||
Sbjct 267 TATGATAGAGGTAAAAAGATCT-ATCAAGCTGAACAATACCGCAAGGGAGCGTGT-ATAA 324
Query 313 ACTGTGGTGCAATGAC--ACATGATATGAAAACATGTATAGAAAGACCTCGTAAGGTTGG 370
|||||||||||||||| ||| | | | ||| ||||||| || |||||||||||| ||||
Sbjct 325 ACTGTGGTGCAATGACTCACA-GTTCT-AAAGCATGTATGGATAGACCTCGTAAGATTGG 382
Query 371 TGCAAAATACACAAACAAGAACATTGCACCTGATGAGAAAATTGAGAGTCTTGAATTTGA 430
|| ||||||||||||| ||||||||| ||||||||||||| |||||| ||||| ||||
Sbjct 383 AGCTAAATACACAAACATGAACATTGCTGCTGATGAGAAAATCGAGAGTTTTGAACTTGA 442
Query 431 TTATGATGGTAAGAGAGACCGATGGAATGGTTATGATCCTTCGTCTTATCGTCATGTGAG 490
|||||||| ||||| ||| ||||||| ||||||||| |||| | || ||||||||| |
Sbjct 443 CTATGATGGGAAGAGGGACAGATGGAACGGTTATGATACTTCAACCTACCGTCATGTG-G 501
Query 491 -AGATCTTTATGAAGCAAAAGAGAATGCACGAGAGAATTA-CTTGAAGGAGCAACAACTT 548
||||| |||||| || |||||| | |||||| |||| || || |||||||| ||||||
Sbjct 502 TAGATCGTTATGATGCTAAAGAGGAGGCACGAAAGAAGTATCTC-AAGGAGCAGCAACTT 560
Query 549 AAGAAACTAGAGGA 562
||||||||||||||
Sbjct 561 AAGAAACTAGAGGA 574
> AT1G65660.1 | Symbols: SMP1 | Pre-mRNA splicing Prp18-interacting
factor | chr1:24418107-24421292 REVERSE LENGTH=1857
Length=1857
Score = 549 bits (297), Expect = 2e-155
Identities = 470/554 (85%), Gaps = 10/554 (2%)
Strand=Plus/Plus
Query 14 TATAACAATGGCGACGGCTTCAGTTGCTTTTAAGTCTAGGGAAGATCGTAGGAAGCAAAA 73
||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 55 TATAATAATGGCGACGGCTTCAGTTGCTTTTAAGTCTAGGGAAGACCATAGGAAGCAAAT 114
Query 74 AGAATTAGACGAAGCTAGAAAAGCCGGGCTTGTTCCGGCTGAGGTAGACGAGAATGGAAA 133
|||||||| |||||| | ||||||||||||| ||| |||||||| || ||| |||||||
Sbjct 115 TGAATTAGAGGAAGCTCGTAAAGCCGGGCTTGCTCCAGCTGAGGTTGATGAGGATGGAAA 174
Query 134 GGAAATCAATCCTCACATAGCTAAGTATTTGTTATCTCCTCCATTCTATGCC-AAGTCTG 192
|||||| |||||||| || | ||||| ||| |||| |||||| ||| | || ||||
Sbjct 175 GGAAATTAATCCTCATATTCCGCAGTATATGTCATCTGCTCCATGGTAT-CTTAATTCTG 233
Query 193 AAAAACCGAGTTTGAAGCATCAAAAGAATTGGAAAACTAAACCCGTTTCCACAAAAG-CA 251
|||||||||||||||||||||||| ||| ||||| | | | ||| || ||| || | |
Sbjct 234 AAAAACCGAGTTTGAAGCATCAAAGGAAATGGAAGAGTGATCCCAATTACACTAA-GTCG 292
Query 252 TATTATGACAGAGGTGCAAAGA-CTTATCAAGCCGAAAAATATCGCAAAGGAGCGTGTCA 310
| ||||| ||||||||||||| ||| |||||| |||||||| ||||| |||||||||||
Sbjct 293 TGGTATGATAGAGGTGCAAAGATCTT-TCAAGCTGAAAAATACCGCAAGGGAGCGTGTCA 351
Query 311 AAACTGTGGTGCAATGACACATGATATGA-AAA-CATGTATAGAAAGACCTCGTAAGGTT 368
|||||||||||||||||| ||| | || ||| | ||||| || || ||||||||| ||
Sbjct 352 AAACTGTGGTGCAATGACGCAT-AC-TGCTAAAGCTTGTATGGATAGGCCTCGTAAGATT 409
Query 369 GGTGCAAAATACACAAACAAGAACATTGCACCTGATGAGAAAATTGAGAGTCTTGAATTT 428
|| || || |||||||||| ||||||||||||||||||||||||||| ||| ||||| ||
Sbjct 410 GGGGCGAAGTACACAAACATGAACATTGCACCTGATGAGAAAATTGAAAGTTTTGAACTT 469
Query 429 GATTATGATGGTAAGAGAGACCGATGGAATGGTTATGATCCTTCGTCTTATCGTCATGTG 488
|| || ||||| ||||| ||| ||||||||||||||||||||||| | || | || ||||
Sbjct 470 GACTACGATGGCAAGAGGGACAGATGGAATGGTTATGATCCTTCGACCTACCATCGTGTG 529
Query 489 AGAGATCTTTATGAAGCAAAAGAGAATGCACGAGAGAATTACTTGAAGGAGCAACAACTT 548
| |||||||||||||||||||||| |||||||| |||| |||||||||||||| ||||||
Sbjct 530 ATAGATCTTTATGAAGCAAAAGAGGATGCACGAAAGAAGTACTTGAAGGAGCAGCAACTT 589
Query 549 AAGAAACTAGAGGA 562
|||||||| |||||
Sbjct 590 AAGAAACTTGAGGA 603
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56325011490
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5