BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937295

Length=352
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G46020.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) fami...   455    1e-127


> AT3G46020.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family 
protein | chr3:16912344-16913350 REVERSE LENGTH=576
Length=576

 Score =  455 bits (246),  Expect = 1e-127
 Identities = 298/324 (92%), Gaps = 0/324 (0%)
 Strand=Plus/Plus

Query  19   TAAAGATGGCTAAAAGAATCTCAGCTCAACTCTTCGTAAGCAGGTTATCTGCTTATACTA  78
            ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  96   TAAAGATGGCTAAGAGAATCTCAGCTCAACTCTTCGTAAGCAGGTTATCTGCTTATACCA  155

Query  79   CAGATCAATCTCTGAGACAATTGTTTTCTCCTTTTGGTCAGATTAAAGAAGCTCGGCTTA  138
            |||||||||||||||| |||||||| |||||||||||||| || ||||||||||||||||
Sbjct  156  CAGATCAATCTCTGAGGCAATTGTTCTCTCCTTTTGGTCAAATCAAAGAAGCTCGGCTTA  215

Query  139  TTAGAGATTCTGAAACACAGAGACCAAAAGGGTTCGGCTTTATTACATTTGAGTCTGAGG  198
            |||||||||| |||||||||||||| ||||| ||||||||||| || || || ||||| |
Sbjct  216  TTAGAGATTCAGAAACACAGAGACCTAAAGGATTCGGCTTTATCACCTTCGATTCTGAAG  275

Query  199  ATGATGCACGAAAGGCATTGAAAAGCTTAGATGGGAAGATCGTAGATGGTAGACTAATAT  258
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  276  ATGATGCACGAAAGGCATTGAAAAGCTTAGATGGGAAGATTGTAGATGGTAGACTAATAT  335

Query  259  TTGTGGAAGTTGCCAAGAGCTCAGAGGAAGTGACAACGGATATTAACAGTAAGAAAGCCG  318
            |||| ||||| ||||||| | |||||||||||| | ||| |||||||||||| |||||||
Sbjct  336  TTGTTGAAGTAGCCAAGAACGCAGAGGAAGTGAGAGCGGGTATTAACAGTAATAAAGCCG  395

Query  319  AGGACCGCGGATAATTTGGGCATC  342
            |||||||||| |||||  ||||||
Sbjct  396  AGGACCGCGGGTAATTCAGGCATC  419



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16487821672


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5