BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937299
Length=555
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46070.1 | Symbols: | C2H2-type zinc finger family protein ... 723 0.0
AT3G46090.1 | Symbols: ZAT7 | C2H2 and C2HC zinc fingers superf... 320 8e-87
> AT3G46070.1 | Symbols: | C2H2-type zinc finger family protein
| chr3:16920445-16920957 REVERSE LENGTH=513
Length=513
Score = 723 bits (391), Expect = 0.0
Identities = 475/515 (92%), Gaps = 7/515 (1%)
Strand=Plus/Plus
Query 24 ATGGTTGCGGAAAGTGATAATCTTGATCCGACGGCGGATACGGCGGCGAACTGTCTGATG 83
|||||||| ||||||||||||| ||||| ||||| |||||||||||||| ||||||||||
Sbjct 1 ATGGTTGCTGAAAGTGATAATCGTGATCTGACGGTGGATACGGCGGCGAGCTGTCTGATG 60
Query 84 TTGTTATC-GAAAGTTGGGGAACACGACGGAGGAAAGAAACGTGTTTTCCGATGCAAGAC 142
|||||||| | || |||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 61 TTGTTATCAGGAA-TTGGAGAACACGACGGAAGAAAGAAACGTGTTTTCCGATGCAAGAC 119
Query 143 TTGTAAGAGAGACTTCTTTTCGTTCCAAGCTTTAGGAGGCCACCGTGCAAGCCACACGAA 202
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 120 TTGTGAGAGAGACTTCGATTCGTTCCAAGCTTTAGGAGGCCACCGTGCAAGCCACTCGAA 179
Query 203 ACTTATCAACAGCGACGATAAATCACTACCTGGATCACTTAAGAAGAAGCCTAAAACTAC 262
||| | |||||| |||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 180 ACTAACCAACAGTGACGATAAATCACTTCCTGGATCACCAAAGAAGAAGCCTAAAACTAC 239
Query 263 G---ACGACGTCGTCTCATACTTGTCCGATTTGTGGTTTGGATTTTCCGATAGGACAAGC 319
| |||||| || |||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct 240 GACTACGACGACGGCTCATACTTGTCCGATTTGTGGCTTGGAGTTTCCGATGGGACAAGC 299
Query 320 TCTTGGTGGTCACATGAGGAAACATAGGAACGAGAAAGAACAAGAAAAGGCCTCTAACGA 379
||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 300 TCTTGGTGGTCACATGAGGAAACATAGGAACGAGAAAGAACGAGAAAAGGCTTCTAACGT 359
Query 380 ATTGGTTACGCGTTCTTTCTTGCCGGAGACGACAACGGTGACGACTTTGAAGAAATCGAG 439
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 360 ATTGGTTACGCATTCTTTCATGCCGGAGACGACAACGGTGACGACTTTGAAGAAATCGAG 419
Query 440 TAGTGGGAAGAGAGTGGCGTGTTTGGATTTGGACTCAACTTCGGTGGAGAG-TTTGGTCA 498
|||||||||||||||||||||||||||||| |||| ||||||||||||||| |||| |||
Sbjct 420 TAGTGGGAAGAGAGTGGCGTGTTTGGATTTCGACTTAACTTCGGTGGAGAGCTTTG-TCA 478
Query 499 ATACGGAGTTGGAGTTGGGAAGAACCATGTACTGA 533
| ||||| ||||||||||||||||| |||||||||
Sbjct 479 ACACGGAATTGGAGTTGGGAAGAACGATGTACTGA 513
> AT3G46090.1 | Symbols: ZAT7 | C2H2 and C2HC zinc fingers superfamily
protein | chr3:16926216-16926850 REVERSE LENGTH=635
Length=635
Score = 320 bits (173), Expect = 8e-87
Identities = 334/407 (82%), Gaps = 29/407 (7%)
Strand=Plus/Plus
Query 121 AACGTGTTTTCCGATGCAAGACTTGTAAGAGAGACTTCTTTTCGTTCCAAGCTTTAGGAG 180
|||||||||||||||||||||||||| | ||| |||| ||||| |||||||| ||||
Sbjct 150 AACGTGTTTTCCGATGCAAGACTTGTCTTAAAGAGTTCTCATCGTTTCAAGCTTTGGGAG 209
Query 181 GCCACCGTGCAAGCCACACGAAACTTATCAACAGCGACGATAAATCACTACCTGGATCAC 240
| || ||||||||||||| ||||||||||||||| ||| || |||||| | |||||| |
Sbjct 210 GTCATCGTGCAAGCCACAAGAAACTTATCAACAGTGACAATCCATCACTTCTTGGATC-C 268
Query 241 TT-AAGAAGAAGCCTAAAACTACGACGACGTCGTCTCATACTTGTCCGATTTGTGGTTTG 299
|| || ||| ||||||| | | |||||||| |||||||||| ||||| ||
Sbjct 269 TTGTCCAACAAG---AAAACTA--A--A--ACGTCTCATCCTTGTCCGATATGTGGAGTG 319
Query 300 GATTTTCCGATAGGACAAGCTCTTGGTGGTCACATGAGGAAACATAGGAACGAGAAAGAA 359
| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 320 AAGTTTCCGATGGGACAAGCTCTTGGTGGTCACATGAGGAGACATAGGAACGAGAAAGT- 378
Query 360 CAAGAAAAGGCCTCTAACGAATTGGTTACGCGTTCTTT-CTTGCCGGAGACGACAACGGT 418
| | ||| || | |||||||| |||||||| || ||||||||||| |||||
Sbjct 379 CTC-A---GGC-TC----G--TTGGTTACACGTTCTTTTCTA-CCGGAGACGACGACGGT 426
Query 419 GACGACTTTGAAGAAATCGAGTAGTGGGAAGAGAGTGGCGTGTTTGGATTTGGACTCA-A 477
|||| |||||||||||| |||||||||||||||||||| |||||||||||||||| | |
Sbjct 427 GACGGCTTTGAAGAAATTTAGTAGTGGGAAGAGAGTGGCTTGTTTGGATTTGGACTTAGA 486
Query 478 CTTCGGTGGAGAGTTTGGTCAATACGGA-GTTGGAGTTGGGAAGAAC 523
|||| ||||||||||||||||| ||| ||||||||||||||||||
Sbjct 487 -TTCGATGGAGAGTTTGGTCAATT-GGAAGTTGGAGTTGGGAAGAAC 531
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26624097910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5