BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937302
Length=1371
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46100.1 | Symbols: ATHRS1, HRS1 | Histidyl-tRNA synthetase ... 1068 0.0
AT5G03406.1 | Symbols: | Class II aaRS and biotin synthetases ... 902 0.0
> AT3G46100.1 | Symbols: ATHRS1, HRS1 | Histidyl-tRNA synthetase
1 | chr3:16928294-16931033 REVERSE LENGTH=1660
Length=1660
Score = 1068 bits (578), Expect = 0.0
Identities = 680/725 (94%), Gaps = 23/725 (3%)
Strand=Plus/Plus
Query 1 TCAGCTGAAGAAGAAA-AGAGATGCGAGCGATTCATA---T------GCGATTGAGCTCG 50
|||||||||| ||||| |||||||||||||||||||| | |||||||||||||
Sbjct 29 TCAGCTGAAGCAGAAAGAGAGATGCGAGCGATTCATATCGTGACGACGCGATTGAGCTCG 88
Query 51 AGCTTTAGGCCTATTCTTCTTCTTGACTTCGTTGT-TTCTTGTTCGCCTCCTCCTCG-CG 108
|||||||| |||||||||||||||||||| ||| | |||||||||| |||||||| |
Sbjct 89 AGCTTTAGACCTATTCTTCTTCTTGACTTGGTT-TCTTCTTGTTCG---CCTCCTCGAC- 143
Query 109 AGTTCTCTATCCCTAGGCGCCTAATCTGTGCCGCCGCCAATGGAGGAGGCAGGTCAGGTT 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 144 AGTTCTCTATCCCTAGGCGCCTAATCTGTGCCGCCGCCAATGGAGGAGGCAGGTCAGGTT 203
Query 169 CGATTGTGGCGGCTCCGTTGGTTGTGACTGAAGAAGACTTTCAGAAGAAGATCGATGTCA 228
| ||||| || ||| ||||| | ||||||||||||||||| ||||||||||||||||
Sbjct 204 CCATTGTTGC---TCCTTTGGT-G--ACTGAAGAAGACTTTCACAAGAAGATCGATGTCA 257
Query 229 ATCCTCCTAAAGGAACTCGTGATTTCCCTCCTGAGGATATGCGACTCCGCAATTGGCTCT 288
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 258 ATCCTCCTAAAGGAACTCGTGATTTTCCTCCTGAGGATATGCGTCTCCGCAATTGGCTCT 317
Query 289 TCAACCACTTCAAAGAGGTCTCACGGTTATATGGGTTTGAGGAAGTGGATTATCCAGTAC 348
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 318 TTAACCACTTCAAAGAGGTCTCACGGTTATATGGGTATGAGGAAGTGGATTATCCAGTAC 377
Query 349 TGGAGACGGAGGCATTGTTCATCAGAAAAGCAGGGGAAGAGATTAGAGACCAACTGTACT 408
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 378 TGGAGACGGAGGCATTGTTCATCAGAAAAGCTGGGGAAGAGATTAGAGACCAACTTTACT 437
Query 409 GCTTTGAAGATAGGGGAAATCGGCGTGTAGCATTGAGGCCTGAGCTTACACCTTCTTTAG 468
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 438 GCTTTGAAGATAGAGGAAATCGGCGTGTAGCATTGAGGCCTGAGCTTACACCTTCTTTAG 497
Query 469 CAAGGCTTGTCATACAGAAAGGAAAATCTGTTTCCCTTCCATTGAAGTGGTTTGCTGTTG 528
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 498 CCAGGCTTGTCATACAGAAAGGAAAATCTGTTTCCCTTCCATTGAAGTGGTTTGCAATTG 557
Query 529 GGCAGTGTTGGCGATATGAGAGAATGACTAGAGGAAGGCGACGTGAGCATTACCAGTGGA 588
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 558 GGCAGTGTTGGCGATATGAGAGAATGACAAGAGGAAGGCGACGTGAGCATTACCAATGGA 617
Query 589 ATATGGATATTATTGGTGTGCCTCAAGTAACTGCTGAAGCGGAACTAATTTCATCTATCG 648
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 618 ATATGGATATTATTGGTGTGCCTCAAGTAACTGCTGAAGCAGAACTAATTTCATCTATAG 677
Query 649 TCACCTTCTTCAAGCGAATTGGAATCACTGCATCAGATGTGGGTTTTAAGGTTTCAAGCC 708
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 678 TCACCTTCTTCAAGCGAATTGGAATCACTGCGTCAGATGTGGGTTTTAAGGTTTCAAGCC 737
Query 709 GCAAG 713
|||||
Sbjct 738 GCAAG 742
Score = 1005 bits (544), Expect = 0.0
Identities = 642/685 (94%), Gaps = 23/685 (3%)
Strand=Plus/Plus
Query 710 CAAGATAGAAAAGATTCCAATTGATGAAATCAAAAAGGAACTTGGGTTCACGGGAATATC 769
||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 814 CAAGATAGAAAAGATACCAATTGATGAAATAAAAAAGGAACTTGGGTTCACGGGGATATC 873
Query 770 AGAAGATGCTATTGAACAGTTACTGCAAGTGCTTTCTGTGAAGTCATTGGATGATTTGGA 829
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 874 AGAAGATGCTATTGAACAATTACTGCAAGTGCTTTCTGTGAAGTCCTTGGATGATTTGGA 933
Query 830 AGATATACTTGGTGGAGCAGGAGAAGCCATTGCAGATTTGAAACAACTCTTCTCACTTGC 889
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 934 AGATATAATTGGTGGAGCAGGAGAAGCCATTGCAGATTTGAAACAACTCTTCTCACTTGC 993
Query 890 TGAAAAGTTTGGTTATTCAGAGTGGATACAGTTTGATGCATCTGTTGTGCGCGGTCTTGC 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 994 TGAAAAGTTTGGTTATTCAGAGTGGATACAGTTTGATGCATCTGTTGTGCGCGGTCTTGC 1053
Query 950 TTATTACACTGGTATCGTCTTCGAGGGATTTGATCGAAAAGGGAAGCTGCGAGCTATATG 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1054 TTATTACACTGGTATCGTCTTCGAGGGATTTGATCGAAAAGGGAAGCTGCGAGCTATATG 1113
Query 1010 TGGTGGTGGGAGATATGACAGATTACTCTCTACTTATGGAGGTGATGACATTCCTGCTTG 1069
|||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||
Sbjct 1114 TGGTGGTGGGAGATATGATAGGTTACTCTCTACTTATGGAGGTGATGACTTTCCTGCTTG 1173
Query 1070 TGGTTTTGGTTTCGGCGATGCTGTAATTTTTGAATTGCTCAAGGAGAAGGATTTGCTGCC 1129
||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||
Sbjct 1174 TGGTTTTGGTTTCGGCGATGCTGTAATAGTTGAATTGCTCAAAGAGAAGGATTTGTTGCC 1233
Query 1130 AGAACTAGGACAAGAAGTAGAGAACATAGTGTGTGCTTTGGACAAAGATCTCCAAGGAGC 1189
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1234 AGAACTGGGACAAGAAGTAGAGAACATAGTGTGTGCGTTGGACAAAGATCTCCAAGGAGC 1293
Query 1190 TGCAGCCACCGTTGCAACCGCTCTCAGAGACAAAGGCCAAACCGTTGATTTGGTATTGGA 1249
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1294 TGCAGCCACAGTTGCAACAGCTCTCAGAGACAAAGGCCAAACCGTTGATTTGGTATTAGA 1353
Query 1250 GAGTAAACCGCTGAAATGGGTGTTCAAGAGGGCAGCTCGGGTAAACGCAAGAAGGCTGG- 1308
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1354 GAGTAAACCGCTGAAATGGGTGTTCAAGAGAGCAGCTCGGGTAAACGCAAGAAGGCTGGT 1413
Query 1309 ---G------AA----GA-TGG-----T--T-CGGTCAGTGTCAAGGTGTTGTCTTCAGG 1346
| || || ||| | | |||||||||| |||||||||||||||||
Sbjct 1414 TCTGGTTGGGAAAACAGAGTGGGAAGATGGTTCGGTCAGTGTTAAGGTGTTGTCTTCAGG 1473
Query 1347 TGAGCAGTTCCAAGTCAAACTCAGT 1371
|||||||||||||||||||||||||
Sbjct 1474 TGAGCAGTTCCAAGTCAAACTCAGT 1498
> AT5G03406.1 | Symbols: | Class II aaRS and biotin synthetases
superfamily protein | chr5:839885-841875 FORWARD LENGTH=1304
Length=1304
Score = 902 bits (488), Expect = 0.0
Identities = 625/686 (91%), Gaps = 29/686 (4%)
Strand=Plus/Plus
Query 38 GCGATTGAGCTCGAGC--T-TTAGGCCTATTCTTCTTCTTGACTTCGTTGTTTCTTGTTC 94
|||||||||||| ||| | ||||||| | |||||||||||||| |||||||||||
Sbjct 108 GCGATTGAGCTCCAGCTTTATTAGGCC---TGTTCTTCTTGACTTC---GTTTCTTGTTC 161
Query 95 GCCTCCTCCTCGCGAGTTCTCTATCCCTAGGCGCCTAATCTGTGCCGC---C---GCCAA 148
|||| || ||| ||||||||| |||||||||| | ||||||||||| | | |||
Sbjct 162 GCCT-CT--ACGCCAGTTCTCTACCCCTAGGCGCTTTATCTGTGCCGCGAGCAAGGTCAA 218
Query 149 TGGAGGAGGCAGGTCAGGTTCGATTGTGGCGGCTCCGTTGGTTGTGACTGAAGAAGACTT 208
||||||||||||||||||||||||||| ||||| ||||| |||| ||||| | | ||
Sbjct 219 TGGAGGAGGCAGGTCAGGTTCGATTGT---TGCTCCATTGGTAGTGAATGAAG-A-A-TT 272
Query 209 TCAGAAGAAGATCGATGTCAATCCTCCTAAAGGAACTCGTGATTTCCCTCCTGAGGATAT 268
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 273 TC---AGAACATCGATGTCAATCCTCCTAAAGGAACTCGTGATTTCCCTCCTGAGGATAT 329
Query 269 GCGACTCCGCAATTGGCTCTTCAACCACTTCAAAGAGGTCTCACGGTTATATGGGTTTGA 328
|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 330 GCGACTCCGCAACTGGCTCTTCAACCACTTCAAAGAGGTCTCACGGTTATTTGGGTATGA 389
Query 329 GGAAGTGGATTATCCAGTACTGGAGACGGAGGCATTGTTCATCAGAAAAGCAGGGGAAGA 388
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 390 GGAAGTGGATTTTCCAGTACTGGAGACGGAGGCATTGTTCATCAGAAAAGCTGGGGAGGA 449
Query 389 GATTAGAGACCAACTGTACTGCTTTGAAGATAGGGGAAATCGGCGTGTAGCATTGAGGCC 448
||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 450 GATTAGAGACCAACTTTACTGCTTTGAAGATAGGGGTAATCGCCGTGTAGCATTGAGGCC 509
Query 449 TGAGCTTACACCTTCTTTAGCAAGGCTTGTCATACAGAAAGGAAAATCTGTTTCCCTTCC 508
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 510 TGAGCTTACACCTTCTTTAGCGAGGCTTGTCATACAGAAAGGAAAATCTGTTTCCCTTCC 569
Query 509 ATTGAAGTGGTTTGCTGTTGGGCAGTGTTGGCGATATGAGAGAATGACTA-GAGGAAGGC 567
||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||
Sbjct 570 ATTGAAGTGGTTTGCTGTTGGGCAGTGTTGGAGATATGAGAGAATGAC-ACGAGGAAGGC 628
Query 568 GACGTGAGCATTACCAGTGGAATATGGATATTATTGGTGTGCCTCAAGTAACTGCTGAAG 627
|||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||
Sbjct 629 GACGTGAGCATTACCAGTGGAATATGGATATTATTGGTGTGCCTGAAGTTACAGCTGAAG 688
Query 628 CGGAACTAATTTCATCTATCGTCACCTTCTTCAAGCGAATTGGAATCACTGCATCAGATG 687
| ||||||||||||||||| | || ||||||||||||||||||||||||||||||||||
Sbjct 689 CAGAACTAATTTCATCTATAATGACATTCTTCAAGCGAATTGGAATCACTGCATCAGATG 748
Query 688 TGGGTTTTAAGGTTTCAAGCCGCAAG 713
||||||||||||||||||||||||||
Sbjct 749 TGGGTTTTAAGGTTTCAAGCCGCAAG 774
Score = 322 bits (174), Expect = 6e-87
Identities = 231/257 (90%), Gaps = 10/257 (4%)
Strand=Plus/Plus
Query 1121 TTTGCTGCCAGAACTAGGACAAGAAGTAGAGAACATAGTGTGTGCTTTGGACAAAGATCT 1180
|||| |||||||| | |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 881 TTTGTTGCCAGAATTGGGACAAGAAGTAGAGAACATCGTGTGTGCTTTGGACAAAGATCT 940
Query 1181 CCAAGGAGCTGCAGCCACCGTTGCAACCGCTCTCAGAGACAAAGGCCAAACCGTTGATTT 1240
||||||||||||| ||||| ||||||||||||| | ||||||||| ||||||||||||||
Sbjct 941 CCAAGGAGCTGCAACCACCATTGCAACCGCTCTTAAAGACAAAGGGCAAACCGTTGATTT 1000
Query 1241 GGTATTGGAGAGTAAACCGCTGAAATGGGTGTTCAAGAGGGCAGCTCGGGTAAACGCAAG 1300
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1001 AGTATTGGAGAGTAAACCGCTGAAATGGGTGTTCAAGAGAGCGGCTCGGGTAAACGCAAG 1060
Query 1301 AAGGC---T---GG--G--AAGATGGTTCGGTCAGTGTCAAGGTGTTGTCTTCAGGTGAG 1350
||||| | || | ||| ||||||||||||||||||||| |||||||||||||||
Sbjct 1061 AAGGCCGGTTCTGGTTGGGAAGTTGGTTCGGTCAGTGTCAAGGTTTTGTCTTCAGGTGAG 1120
Query 1351 CAGTTCCAAGTCAAACT 1367
|| || |||||||||||
Sbjct 1121 CAATTTCAAGTCAAACT 1137
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67519733025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5