BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937305

Length=1041
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G46110.1 | Symbols:  | Domain of unknown function (DUF966) |...  1103    0.0  
  AT2G07798.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...  86.1    6e-16


> AT3G46110.1 | Symbols:  | Domain of unknown function (DUF966) 
| chr3:16932112-16933726 FORWARD LENGTH=1302
Length=1302

 Score = 1103 bits (597),  Expect = 0.0
 Identities = 816/914 (89%), Gaps = 45/914 (5%)
 Strand=Plus/Plus

Query  95    AGACTCAAAACCCTCCAGCGAACAGAAAGTCCCCGTCGTTTATTATCTCAGCCGGAATGG  154
             |||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||
Sbjct  162   AGACTCAAAACCCTCCAGGGAACGGATAGTCCCCGTCGTTTATTATCTCAGCCGGAATGG  221

Query  155   CCAACTAGATCACCCACACTTCATTGAAGTACCTCTCTCTTCTCACAACGGTCTCTATCT  214
             || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  222   CCGACTCGATCACCCACACTTCATTGAAGTACCTCTCTCTTCTCACAACGGTCTCTATCT  281

Query  215   CAAAGATGTGATCAATCGTTTGAATGATCTACGAGGCAAAGGAATGGCTTCTCTCTACTC  274
             ||||||||| |||||| | || ||||||||||||||||| |||||||||| |||||||||
Sbjct  282   CAAAGATGTAATCAATAGATTAAATGATCTACGAGGCAATGGAATGGCTTGTCTCTACTC  341

Query  275   TTGGTCTTCAAAACGAGCTTACAAGAACGGATTCGTATGGCACGATTTATCAGAGGAAGA  334
             |||||| ||||||||| ||||||||||||| ||||| ||| ||||||||||||| |||||
Sbjct  342   TTGGTCCTCAAAACGAACTTACAAGAACGGTTTCGTCTGGTACGATTTATCAGATGAAGA  401

Query  335   TTTTATTTTTCCCGTTCATGGCCAAGAATACGTCCTCAAAGGCTCTCAAATTCTTGACCT  394
             ||| |||||||||||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct  402   TTTCATTTTTCCCGTTCATGGCCAAGAATATGTACTCAAAGGCTCTCAAATTCTCGACCT  461

Query  395   TGATAATAACTCCGGTAAAGAATCTAACTTCTCCGCCGTCACTCACCGGCGTAACCAGTC  454
             ||||||||||||||||    ||  |   ||||||||||||||||||||||||||||||||
Sbjct  462   TGATAATAACTCCGGT----AA--T---TTCTCCGCCGTCACTCACCGGCGTAACCAGTC  512

Query  455   TTGGAGCTCTATTG---A-T-C--A--CTACAAAGCGTC---------CACTGAGTCAAC  496
             |||||||||| |||   | | |  |  ||||||||||||         | ||||| ||||
Sbjct  513   TTGGAGCTCTGTTGATCATTACAAAGTCTACAAAGCGTCTGAGTTAAACGCTGAGGCAAC  572

Query  497   TCGTAAACTCGCGACGGACGCTTCAACACAGACTGATGATCGTCGGCGGAGGAAAATTCC  556
             |||||||||| ||| ||| ||||| |||||||||||||||||||| |||||||||| | |
Sbjct  573   TCGTAAACTCTCGATGGATGCTTCGACACAGACTGATGATCGTCGCCGGAGGAAAAGT-C  631

Query  557   GGCGAAAGAGGTGGATGAAGTGAATGAGATCACTGAGCTGAGTAAAGAAGAGGTTACTTC  616
               |      ||||||||||||||||||| ||||||||||||||| ||||||| |||||||
Sbjct  632   --C------GGTGGATGAAGTGAATGAGGTCACTGAGCTGAGTAGAGAAGAGATTACTTC  683

Query  617   GCCTCCACAGTCAGATTCGAGTCCAGAAACATTGGAATCATTGATGAAAGCAGATGGACG  676
             |||||||||||||||||| || |||||||| || ||||||||||||| ||||||||||||
Sbjct  684   GCCTCCACAGTCAGATTCTAGCCCAGAAACCTTAGAATCATTGATGAGAGCAGATGGACG  743

Query  677   GTTGATATTGCTTCCGGAAGATCAAGAATTGAATCGGACGGTTGAGAAGATGCGTCCGTC  736
             |||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||
Sbjct  744   GTTGATATTGCTTCAGGAAGATCAAGAATTGAATCGGACGGTTGAGAAGATGCGACCATC  803

Query  737   GGCTGTTCTCATGCAGTTGATATCGTGTGGTGCGATGTCGTTTAAGAAATGTGGTCCGAC  796
             ||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct  804   GGCTGTTCTGATGCAGCTGATATCGTGCGGTGCGATGTCGTTTAAGAAATGTGGTCCGAC  863

Query  797   GCTAATGAATAGGAACACGAGTA-GTAGGGTGGAATG-GA-GAACAGGTAATTATAGGCT  853
             |||||||||| |||||||||| |  || || ||  || || ||||||| |||||||||||
Sbjct  864   GCTAATGAATGGGAACACGAG-ATCTACGGCGG--TGCGAGGAACAGGGAATTATAGGCT  920

Query  854   CGAAAGGGCAGAGAAGGAGTTAAGGAGTTTTGGAAGGGTAAAATTGGAAGAGAAAGAGTA  913
             ||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct  921   CGAGAGGGCAGAGAAGGAATTAAAGAGTTTTGGAAGGGTAAAATTGGAAGAGAAAGAGTA  980

Query  914   TTTTAGTGGTAGCTTGATTGATGAGAGTAGTAGTAAGAAGGAACTTGTTCCTGCTTTGAA  973
             ||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||
Sbjct  981   TTTTAGTGGTAGCTTGATTGATGAGAGTAGTA--A-GAAGGAACTTGTTCCTGCTTTGAA  1037

Query  974   GAGGTCTTCTTCTT  987
             |||||| |||||||
Sbjct  1038  GAGGTCATCTTCTT  1051


> AT2G07798.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:ATMG01220.1); 
Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:3357619-3361102 
FORWARD LENGTH=1480
Length=1480

 Score = 86.1 bits (46),  Expect = 6e-16
 Identities = 46/46 (100%), Gaps = 0/46 (0%)
 Strand=Plus/Plus

Query  996   TCCCCTGTAGCTAGCTTTGATTAAAGAGTCTCTTTCTTGGTTCGTT  1041
             ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  111   TCCCCTGTAGCTAGCTTTGATTAAAGAGTCTCTTTCTTGGTTCGTT  156



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 51037893352


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5