BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937309
Length=1226
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46140.1 | Symbols: | Protein kinase superfamily protein | ... 1162 0.0
AT3G45790.1 | Symbols: | Protein kinase superfamily protein | ... 1070 0.0
> AT3G46140.1 | Symbols: | Protein kinase superfamily protein
| chr3:16948090-16949220 FORWARD LENGTH=1131
Length=1131
Score = 1162 bits (629), Expect = 0.0
Identities = 829/926 (90%), Gaps = 11/926 (1%)
Strand=Plus/Plus
Query 294 GAAGAGTAATAGTAGTAGAAGCGTTAAAGAGATAACCAAAGAAGTATTCGATGGAGTAGT 353
|||||||| ||||||| | || ||| |||||||||||||| |||||||||| ||||||||
Sbjct 210 GAAGAGTAGTAGTAGTCGCAGTGTTGAAGAGATAACCAAACAAGTATTCGACGGAGTAGT 269
Query 354 GAGAAAGTCTTCTTCTTGGATCAAGTCTGAGTTCCTTGGAAGAGGCTCTTATGGTTCGGT 413
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 270 CAGAAAGTCTTCATCTTGGATCAAGTCTGAGTTCCTTGGAAGAGGCTCTTACGGTTCGGT 329
Query 414 TTATCTAGCGACAAGTAAGAAAGACAAAGGTAAAACAATCATGGCGATAAAATCTGCAGA 473
|||||| |||||||||||||| | |||| |||||| | ||||||||| |||||||||||
Sbjct 330 TTATCTGGCGACAAGTAAGAAGGCCAAAACTAAAACGACCATGGCGATCAAATCTGCAGA 389
Query 474 GATTTCACGAGCTTCAAGTCTTATGGAGGAGGAAAGAATATTAACCCGTCTCTTATCTCC 533
||||||||||||||| ||||| ||||| ||||||||||||||||||||||||| ||||||
Sbjct 390 GATTTCACGAGCTTCGAGTCTAATGGACGAGGAAAGAATATTAACCCGTCTCTCATCTCC 449
Query 534 TTTCGTTGTTCGTTGCTATGGCCACGAGATTGCACTTGAGGAGACTCTGTTCGGTGGATC 593
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 450 TTTCATTGTTCGTTGCTATGGCCACGAGATTGCACGTGAGGAGACTCTGTTCGGTGGCGA 509
Query 594 GAGAACGAACTACAATTTGATTCTCGAGTATTGCTCCGGCAAAAGCCT-TGCCGACTTGA 652
||||||||| |||||||||||||||||||||||||| ||||||||||| | | ||||||
Sbjct 510 GAGAACGAATTACAATTTGATTCTCGAGTATTGCTCTGGCAAAAGCCTCTTC-GACTTGG 568
Query 653 TCGA-GAATAACATAGGAGGATTATCAGAGAAAGATGTGAAAATGT-TTGCTAGATATAT 710
|| | || |||| | |||||||| |||||||||||||||||| | | |||||||| ||||
Sbjct 569 TCAACGA-TAACCTTGGAGGATTGTCAGAGAAAGATGTGAAACT-TCTTGCTAGAGATAT 626
Query 711 CCTTAACGGTCTCAACTACATCCATAGGGAAAATATTATTCATTGTGACATTAAACCGGA 770
|||| |||||||| ||| |||||| |||| ||| ||||||||||||||||||||||||||
Sbjct 627 CCTTTACGGTCTCGACTGCATCCACAGGGCAAACATTATTCATTGTGACATTAAACCGGA 686
Query 771 AAATATCTTACT-ATCCCCTGTGGAGAACCGGATAAGACCTAATGGGTATGTGACAAAGA 829
||||||||| || | ||||||| ||||||||||||||||||| |||||||||| ||||||
Sbjct 687 AAATATCTT-CTTAACCCCTGTCGAGAACCGGATAAGACCTAGTGGGTATGTGGCAAAGA 745
Query 830 TTGGAGATTTCGGTTTAGCATTGGAGAAGGGGTCGAGCGAGTATGAAAAAGCACCGGGTC 889
|||| |||||||||||||||||||||||||| || |||||||||||||||||| | ||||
Sbjct 746 TTGGGGATTTCGGTTTAGCATTGGAGAAGGGTTCAAGCGAGTATGAAAAAGCATCAGGTC 805
Query 890 ATACGAGAGGCACAACTAGATACATGTCTCCGGAGCTTATACGCCACGGGATAGTTGATT 949
||| |||||||||||| ||||||||||||||||||||||||| || ||||| |||||||
Sbjct 806 ATAGGAGAGGCACAACGCGATACATGTCTCCGGAGCTTATACGACATGGGATTGTTGATT 865
Query 950 ACGCTGTTGACATTTGGGCTTACGGATGCACGGTTTTGGAAATGTTTACGGGACAAGAAG 1009
|||||||||||| ||||||| ||||||||| |||||||||||||| ||||||||| |||
Sbjct 866 ACGCTGTTGACACGTGGGCTTTCGGATGCACAGTTTTGGAAATGTTAACGGGACAACAAG 925
Query 1010 TATGGGGAGAACACAGTGATTTGGGTCCTGTAGATTGGGACAGTCTCATCGGTCTAAGCA 1069
||||||||||||| |||||| | ||| ||||||||||||||| ||||||||||| ||||
Sbjct 926 TATGGGGAGAACATAGTGATCTCGGTTCTGTAGATTGGGACATTCTCATCGGTCAAAGCT 985
Query 1070 GTTTCATTCCTTATATACCGGATTGGTTATCTGAAGAAGCACAAG-ATTTTCTGAGTTGT 1128
||| ||||||||||||||||||||||||||||||||||||||| | ||||||| || |
Sbjct 986 GTTACATTCCTTATATACCGGATTGGTTATCTGAAGAAGCACA-GCATTTTCTCAGCAGA 1044
Query 1129 TGTTTGGTTAGGGATCATGGTTCAAGGTGGGGGATTGGTGCACTCATGAACCATCCCTTT 1188
||||| ||||| | || ||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1045 TGTTTAAAAAGGGACCCTGCTTCAAGGTGGGGGATTGGTGCACTCTTGAACCACCCCTTT 1104
Query 1189 T-GCAATGTGGATGTATAATTGTTTA 1213
| ||||||||||| ||||||||||||
Sbjct 1105 TTGCAATGTGGATCTATAATTGTTTA 1130
> AT3G45790.1 | Symbols: | Protein kinase superfamily protein
| chr3:16825005-16826222 REVERSE LENGTH=1131
Length=1131
Score = 1070 bits (579), Expect = 0.0
Identities = 748/831 (90%), Gaps = 6/831 (1%)
Strand=Plus/Plus
Query 294 GAAGAGTAATAGTAGTAGAAGCGTTAAAGAGATAACCAAAGAAGTATTCGATGGAGTAGT 353
|||||||| ||||||| || ||| |||||||||||||| |||||||||| ||||||||
Sbjct 210 GAAGAGTAGTAGTAGTCTCAGTGTTGAAGAGATAACCAAACAAGTATTCGACGGAGTAGT 269
Query 354 GAGAAAGTCTTCTTCTTGGATCAAGTCTGAGTTCCTTGGAAGAGGCTCTTATGGTTCGGT 413
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 270 CAGAAAGTCTTCATCTTGGATCAAGTCTGAGTTCCTTGGAAGAGGCTCTTACGGTTCGGT 329
Query 414 TTATCTAGCGACAAGTAAGAAAGACAAAGGTAAAACAATCATGGCGATAAAATCTGCAGA 473
|||||| |||||||||||||| | |||| |||||| | ||||||||| |||||||||||
Sbjct 330 TTATCTGGCGACAAGTAAGAAGGCCAAAACTAAAACGACCATGGCGATCAAATCTGCAGA 389
Query 474 GATTTCACGAGCTTCAAGTCTTATGGAGGAGGAAAGAATATTAACCCGTCTCTTATCTCC 533
||||||||||||||| ||||| ||||| ||||||||||||||||||||||||| ||||||
Sbjct 390 GATTTCACGAGCTTCGAGTCTAATGGACGAGGAAAGAATATTAACCCGTCTCTCATCTCC 449
Query 534 TTTCGTTGTTCGTTGCTATGGCCACGAGATTGCACTTGAGGAGACTCTGTTCGGTGGATC 593
|||| | |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 450 TTTCATCGTTCGTTGCTATGGCCACGAGATTGCACGCGAGGAGACTCTGTTCGGTGGCGA 509
Query 594 GAGAACGAACTACAATTTGATTCTCGAGTATTGCTCCGGCAAAAGCCT-TGCCGACTTGA 652
||||||||| |||||||||||||||||||||||||| ||||||||||| | | ||||||
Sbjct 510 GAGAACGAATTACAATTTGATTCTCGAGTATTGCTCTGGCAAAAGCCTCTTC-GACTTGG 568
Query 653 TCGAGAATAACATAGGAGGATTATCAGAGAAAGATGTGAAAATGT-TTGCTAGATATATC 711
|| | | |||| | |||||||| |||||||||||||||||| | | |||||||| |||||
Sbjct 569 TCAACAGTAACCTTGGAGGATTGTCAGAGAAAGATGTGAAACT-TCTTGCTAGAGATATC 627
Query 712 CTTAACGGTCTCAACTACATCCATAGGGAAAATATTATTCATTGTGACATTAAACCGGAA 771
||| |||||||| |||||||||| |||| ||| ||||||||||||||||| |||||||||
Sbjct 628 CTTTACGGTCTCGACTACATCCACAGGGCAAACATTATTCATTGTGACATCAAACCGGAA 687
Query 772 AATATCTTACTATCCCCTGTGGAGAACCGGATAAGACCTAATGGGTATGTGACAAAGATT 831
|||||||||||| ||||||| |||||||||||||||||||||||||| ||| ||||||||
Sbjct 688 AATATCTTACTAGCCCCTGTCGAGAACCGGATAAGACCTAATGGGTACGTGGCAAAGATT 747
Query 832 GGAGATTTCGGTTTAGCATTGGAGAAGGGGTCGAGCGAGTATGAAAAAGCACCGGGTCAT 891
|| |||||||||||||||||||||||||| || |||||||||||||||||| | ||||||
Sbjct 748 GGGGATTTCGGTTTAGCATTGGAGAAGGGTTCAAGCGAGTATGAAAAAGCATCAGGTCAT 807
Query 892 ACGAGAGGCACAACTAGATACATGTCTCCGGAGCTTATACGCCACGGGATAGTTGATTAC 951
| |||||||||||| ||||||||||||||||||||||||| || ||||| |||||||||
Sbjct 808 AGGAGAGGCACAACGCGATACATGTCTCCGGAGCTTATACGACATGGGATTGTTGATTAC 867
Query 952 GCTGTTGACATTTGGGCTTACGGATGCACGGTTTTGGAAATGTTTACGGGACAAGAAGTA 1011
|||||||||| ||||||| ||||||||| |||||||||||||| ||||||||| |||||
Sbjct 868 GCTGTTGACACGTGGGCTTTCGGATGCACAGTTTTGGAAATGTTAACGGGACAACAAGTA 927
Query 1012 TGGGGAGAACACAGTGATTTGGGTCCTGTAGATTGGGACAGTCTCATCGGTCTAAGCAGT 1071
||||||||||| |||||| | ||| ||||||||||||||| ||||||||||| |||| ||
Sbjct 928 TGGGGAGAACATAGTGATCTCGGTTCTGTAGATTGGGACATTCTCATCGGTCAAAGCTGT 987
Query 1072 TTCATTCCTTATATACCGGATTGGTTATCTGAAGAAGCACAAG-ATTTTCT 1121
| ||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 988 TACATTCCTTATATACCGGATTGGTTATCTGAAGAAGCACA-GCATTTTCT 1037
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60240654000
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5